RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 CXCL8P10145 99 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 PRCPP42785 496 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 FXR1P51114 621 aaKnown RBP eCLIP12.86□□□□□ -0.35
SNCA-202ENST00000345009 CYP2J2P51589 502 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 LSM11P83369 360 aaKnown RBP eCLIP12.86□□□□□ -0.35
SNCA-202ENST00000345009 TUSC3Q13454 348 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 MORC3Q14149 939 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 SLC10A6Q3KNW5 377 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 EPC2Q52LR7 807 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 SEZ6Q53EL9 994 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 XKR4Q5GH76 650 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 CCDC183Q5T5S1 534 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 ISM2Q6H9L7 571 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 KCNT2Q6UVM3 1135 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 LRRC55Q6ZSA7 311 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 NT5DC4Q86YG4 428 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 SLC9A9Q8IVB4 645 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 SPNS2Q8IVW8 549 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 MLKLQ8NB16 471 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 CACTINQ8WUQ7 758 aaKnown RBP12.86□□□□□ -0.35
SNCA-202ENST00000345009 TMEM174Q8WUU8 243 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 P2RX5Q93086 422 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 ZDHHC16Q969W1 377 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 SAAL1Q96ER3 474 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 SNX27Q96L92 541 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 UROC1Q96N76 676 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 COLEC11Q9BWP8 271 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 HAPLN2Q9GZV7 340 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 KCTD10Q9H3F6 313 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 RBAKQ9NYW8 714 aaPredicted RBP12.86□□□□□ -0.35
SNCA-202ENST00000345009 SPG21Q9NZD8 308 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 CNTN3Q9P232 1028 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 DACH1Q9UI36 760 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 MTUS1Q9ULD2 1270 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 TRAF3IP3Q9Y228 551 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 DERAQ9Y315 318 aa12.86□□□□□ -0.35
SNCA-202ENST00000345009 R3HCC1Q9Y3T6 440 aaKnown RBP12.86□□□□□ -0.35
SNCA-202ENST00000345009 TTC26A0AVF1 554 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 TISP43B9A030 160 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 CETN3O15182 167 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 FAM189A1O60320 539 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 NR3C1P04150 777 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 RPL9P32969 192 aaKnown RBP12.85□□□□□ -0.35
SNCA-202ENST00000345009 BCAR1P56945 870 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 LRRC63Q05C16 580 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 ENOX2Q16206 610 aaKnown RBP12.85□□□□□ -0.35
SNCA-202ENST00000345009 SNRNP35Q16560 246 aaKnown RBP12.85□□□□□ -0.35
SNCA-202ENST00000345009 NFIL3Q16649 462 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 PTPROQ16827 1216 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 EDRF1Q3B7T1 1238 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 SMYD4Q8IYR2 804 aaPredicted RBP12.85□□□□□ -0.35
SNCA-202ENST00000345009 ADSSL1Q8N142 457 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 COLGALT1Q8NBJ5 622 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 GSTCDQ8NEC7 633 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 TMEM169Q96HH4 297 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 C17orf80Q9BSJ5 609 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 CWH43Q9H720 699 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 NRDE2Q9H7Z3 1164 aa12.85□□□□□ -0.35
SNCA-202ENST00000345009 UBQLN1Q9UMX0 589 aaKnown RBP12.85□□□□□ -0.35
SNCA-202ENST00000345009 CHD7Q9P2D1 2997 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 COL4A6Q14031 1691 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 GOLGA8IPA6NC78 632 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 GOLGA8JA6NMD2 632 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 LACTBL1A8MY62 500 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 H3BNC9 293 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 PTGESO14684 152 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 LETM1O95202 739 aaPredicted RBP12.84□□□□□ -0.35
SNCA-202ENST00000345009 FGFR1OPO95684 399 aaKnown RBP12.84□□□□□ -0.35
SNCA-202ENST00000345009 ADRB2P07550 413 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 GALTP07902 379 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 NR2F2P24468 414 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 TNFSF9P41273 254 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 OR1G1P47890 313 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 AFF1P51825 1210 aaKnown RBP12.84□□□□□ -0.35
SNCA-202ENST00000345009 FKBP3Q00688 224 aaKnown RBP12.84□□□□□ -0.35
SNCA-202ENST00000345009 UBE3AQ05086 875 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 DSC1Q08554 894 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 ADAM9Q13443 819 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 GPM6BQ13491 265 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 TMEM132DQ14C87 1099 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 KLHL40Q2TBA0 621 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 CT47A1Q5JQC4 288 aaPredicted RBP12.84□□□□□ -0.35
SNCA-202ENST00000345009 CENPPQ6IPU0 288 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 SASS6Q6UVJ0 657 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 ZNF280BQ86YH2 543 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 BRSK2Q8IWQ3 736 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 COLGALT2Q8IYK4 626 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 DEFB123Q8N688 67 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 BEST2Q8NFU1 509 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 FBXL18Q96ME1 805 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 PPP1R10Q96QC0 940 aaKnown RBP12.84□□□□□ -0.35
SNCA-202ENST00000345009 FNBP1Q96RU3 617 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 GAS2L1Q99501 681 aaPredicted RBP12.84□□□□□ -0.35
SNCA-202ENST00000345009 IKZF4Q9H2S9 585 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 CERS4Q9HA82 394 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 MIOSQ9NXC5 875 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 C2CD2Q9Y426 696 aa12.84□□□□□ -0.35
SNCA-202ENST00000345009 FNDC1Q4ZHG4 1894 aaPredicted RBP12.83□□□□□ -0.36
SNCA-202ENST00000345009 MAPK13O15264 365 aa12.83□□□□□ -0.36
SNCA-202ENST00000345009 TRAPPC3O43617 180 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms