RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 B3GAT3O94766 335 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 KIF4AO95239 1232 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 LDHAP00338 332 aaKnown RBP20.88■□□□□ 0.93
SYNE4-202ENST00000340477 GARTP22102 1010 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 CASP1P29466 404 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 GTF2F1P35269 517 aaKnown RBP eCLIP20.88■□□□□ 0.93
SYNE4-202ENST00000340477 TNFSF9P41273 254 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 ADAM15Q13444 863 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 PTPN14Q15678 1187 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 CTC1Q2NKJ3 1217 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 SLC10A6Q3KNW5 377 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 LEXMQ3ZCV2 418 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 ARMCX5Q6P1M9 558 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 DCLRE1AQ6PJP8 1040 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 KRBA2Q6ZNG9 492 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 PPFIBP1Q86W92 1011 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 HASPINQ8TF76 798 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 AUTS2Q8WXX7 1259 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 RABGGTAQ92696 567 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 HPS3Q969F9 1004 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 VN1R3Q9BXE9 311 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 CXCL16Q9H2A7 254 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 CACNG4Q9UBN1 327 aa20.88■□□□□ 0.93
SYNE4-202ENST00000340477 CPSF3Q9UKF6 684 aaKnown RBP20.88■□□□□ 0.93
SYNE4-202ENST00000340477 TTC26A0AVF1 554 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 TISP43B9A030 160 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 F8W810 466 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 H3BQ06 376 aaPredicted RBP20.87■□□□□ 0.93
SYNE4-202ENST00000340477 TMEM189-UBE2V1I3L0A0 370 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 C2CD2LO14523 706 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 KIAA0391O15091 583 aaKnown RBP20.87■□□□□ 0.93
SYNE4-202ENST00000340477 ZNF202O95125 648 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 RPL9P32969 192 aaKnown RBP20.87■□□□□ 0.93
SYNE4-202ENST00000340477 CLCNKBP51801 687 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 KCNA1Q09470 495 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 ENOX2Q16206 610 aaKnown RBP20.87■□□□□ 0.93
SYNE4-202ENST00000340477 ELMSAN1Q6PJG2 1045 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 NOC3LQ8WTT2 800 aaKnown RBP20.87■□□□□ 0.93
SYNE4-202ENST00000340477 CASP10Q92851 521 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 ZMAT2Q96NC0 199 aaKnown RBP20.87■□□□□ 0.93
SYNE4-202ENST00000340477 PAAF1Q9BRP4 392 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 FGFBP2Q9BYJ0 223 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 GOLPH3LQ9H4A5 285 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 GOLGA2P5Q9HBQ8 144 aa20.87■□□□□ 0.93
SYNE4-202ENST00000340477 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.87■□□□□ 0.93
SYNE4-202ENST00000340477 UBQLN1Q9UMX0 589 aaKnown RBP20.87■□□□□ 0.93
SYNE4-202ENST00000340477 PODXLO00592 558 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 LINC01565O15544 149 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 FAM189A1O60320 539 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 IL18RAPO95256 599 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 ADH1AP07327 375 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 ACOT2P49753 483 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 POU5F1Q01860 360 aaKnown RBP20.86■□□□□ 0.93
SYNE4-202ENST00000340477 PSMD2Q13200 908 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 UPP1Q16831 310 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 ZBTB41Q5SVQ8 909 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 LLGL2Q6P1M3 1020 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 PDXDC1Q6P996 788 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 HS2ST1Q7LGA3 356 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 CD207Q9UJ71 328 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 HOOK1Q9UJC3 728 aaKnown RBP20.86■□□□□ 0.93
SYNE4-202ENST00000340477 NUB1Q9Y5A7 615 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 UNC80Q8N2C7 3258 aa20.86■□□□□ 0.93
SYNE4-202ENST00000340477 SPDYE4A6NLX3 237 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 LACTBL1A8MY62 500 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 TULP1O00294 542 aaPredicted RBP20.85■□□□□ 0.93
SYNE4-202ENST00000340477 CLASP2O75122 1294 aaKnown RBP20.85■□□□□ 0.93
SYNE4-202ENST00000340477 TBX10O75333 385 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 CYP3A5P20815 502 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 KLRC2P26717 231 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 DSG1Q02413 1049 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 EHHADHQ08426 723 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 TMEM132DQ14C87 1099 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 FAM171A1Q5VUB5 890 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 GPR65Q8IYL9 337 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 RNF168Q8IYW5 571 aaPredicted RBP20.85■□□□□ 0.93
SYNE4-202ENST00000340477 BEST2Q8NFU1 509 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 C18orf25Q96B23 403 aaPredicted RBP20.85■□□□□ 0.93
SYNE4-202ENST00000340477 FAM213AQ9BRX8 229 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 TTPALQ9BTX7 342 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 GPR62Q9BZJ7 368 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 ASB7Q9H672 318 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 SLC39A2Q9NP94 309 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 DERAQ9Y315 318 aa20.85■□□□□ 0.93
SYNE4-202ENST00000340477 ANK1P16157 1881 aa20.84■□□□□ 0.93
SYNE4-202ENST00000340477 KIF20AO95235 890 aa20.84■□□□□ 0.93
SYNE4-202ENST00000340477 RPN1P04843 607 aaKnown RBP20.84■□□□□ 0.93
SYNE4-202ENST00000340477 ADSSP30520 456 aa20.84■□□□□ 0.93
SYNE4-202ENST00000340477 KCNQ1P51787 676 aa20.84■□□□□ 0.93
SYNE4-202ENST00000340477 SNRPFP62306 86 aaKnown RBP20.84■□□□□ 0.93
SYNE4-202ENST00000340477 FAM160A1Q05DH4 1040 aa20.84■□□□□ 0.93
SYNE4-202ENST00000340477 SOX4Q06945 474 aaPredicted RBP20.84■□□□□ 0.93
SYNE4-202ENST00000340477 SPAG1Q07617 926 aa20.84■□□□□ 0.93
SYNE4-202ENST00000340477 CLUL1Q15846 466 aa20.84■□□□□ 0.93
SYNE4-202ENST00000340477 KMT5BQ4FZB7 885 aa20.84■□□□□ 0.93
SYNE4-202ENST00000340477 PTCRAQ6ISU1 281 aaPredicted RBP20.84■□□□□ 0.93
SYNE4-202ENST00000340477 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.84■□□□□ 0.93
SYNE4-202ENST00000340477 EPM2AIP1Q7L775 607 aaPredicted RBP20.84■□□□□ 0.93
SYNE4-202ENST00000340477 CEP57Q86XR8 500 aa20.84■□□□□ 0.93
SYNE4-202ENST00000340477 GOLGA5Q8TBA6 731 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms