RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 BTN3A3O00478 584 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 PTH1RQ03431 593 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 THEM5Q8N1Q8 247 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 DDX47Q9H0S4 455 aaKnown RBP13.47□□□□□ -0.25
USP47-202ENST00000339865 EPC1Q9H2F5 836 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 TRABDQ9H4I3 376 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 SPASTQ9UBP0 616 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 MCM8Q9UJA3 840 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 NCOA1Q15788 1441 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 E9PBE3 544 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 PARNO95453 639 aaKnown RBP13.47□□□□□ -0.25
USP47-202ENST00000339865 IL2RBP14784 551 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 CHN1P15882 459 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 MB21D1Q8N884 522 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 PLBD2Q8NHP8 589 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 ERP27Q96DN0 273 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 C6orf62Q9GZU0 229 aaPredicted RBP13.47□□□□□ -0.25
USP47-202ENST00000339865 POLR1BQ9H9Y6 1135 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 AVENQ9NQS1 362 aaPredicted RBP13.47□□□□□ -0.25
USP47-202ENST00000339865 AKAP5P24588 427 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 VHLP40337 213 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 FAM117BQ6P1L5 589 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 BTG4Q9NY30 223 aa13.47□□□□□ -0.25
USP47-202ENST00000339865 MAP3K13O43283 966 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 SYNCRIPO60506 623 aaKnown RBP13.46□□□□□ -0.25
USP47-202ENST00000339865 EPB42P16452 691 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 PSMA4P25789 261 aaKnown RBP13.46□□□□□ -0.25
USP47-202ENST00000339865 EIF4A2Q14240 407 aaKnown RBP13.46□□□□□ -0.25
USP47-202ENST00000339865 CYP4A22Q5TCH4 519 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 ZNF57Q68EA5 555 aaPredicted RBP13.46□□□□□ -0.25
USP47-202ENST00000339865 FOPNLQ96NB1 174 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 MSTO1Q9BUK6 570 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 URB1O60287 2271 aaKnown RBP13.46□□□□□ -0.25
USP47-202ENST00000339865 TYW3Q6IPR3 259 aaKnown RBP13.46□□□□□ -0.25
USP47-202ENST00000339865 PRUNE1Q86TP1 453 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 FAM129AQ9BZQ8 928 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 SIK2Q9H0K1 926 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 SCAF11Q99590 1463 aaKnown RBP13.46□□□□□ -0.25
USP47-202ENST00000339865 MYH7P12883 1935 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 PLA2G4AP47712 749 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 NLRP11P59045 1033 aaKnown RBP13.46□□□□□ -0.25
USP47-202ENST00000339865 ICA1Q05084 483 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 STX4Q12846 297 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 FRMD6Q96NE9 622 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 UBE2OQ9C0C9 1292 aaKnown RBP13.46□□□□□ -0.25
USP47-202ENST00000339865 RMI1Q9H9A7 625 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 GMEB1Q9Y692 573 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 KCNN4O15554 427 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 PLA2G4BP0C869 781 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 MDH1P40925 334 aaKnown RBP13.46□□□□□ -0.25
USP47-202ENST00000339865 SYTL3Q4VX76 610 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 SHCBP1Q8NEM2 672 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 ENKURQ8TC29 256 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 TBC1D22AQ8WUA7 517 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 ZSWIM6Q9HCJ5 1215 aa13.46□□□□□ -0.25
USP47-202ENST00000339865 ZNF624Q9P2J8 865 aaPredicted RBP13.46□□□□□ -0.25
USP47-202ENST00000339865 A0A0D9SFI3 127 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 B2RBV5 119 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 PDE9AO76083 593 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 SCNN1DP51172 638 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 RALGDSQ12967 914 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 EEPD1Q7L9B9 569 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 SH2D3CQ8N5H7 860 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 TBCKQ8TEA7 893 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 C1orf54Q8WWF1 131 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 PPP2R3CQ969Q6 453 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 SLC10A4Q96EP9 437 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 PHF20L1A8MW92 1017 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 SCGNO76038 276 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 TARSP26639 723 aaKnown RBP13.46□□□□□ -0.26
USP47-202ENST00000339865 LRRC63Q05C16 580 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 FCHO2Q0JRZ9 810 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 CRYMQ14894 314 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 SURF1Q15526 300 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 PDXDC2PQ6P474 469 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 MIEF2Q96C03 454 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 SPON2Q9BUD6 331 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 RANBP17Q9H2T7 1088 aaKnown RBP13.46□□□□□ -0.26
USP47-202ENST00000339865 BFARQ9NZS9 450 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 PCDHA4Q9UN74 947 aa13.46□□□□□ -0.26
USP47-202ENST00000339865 KLHL2O95198 593 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 DCTN2Q13561 401 aaKnown RBP13.45□□□□□ -0.26
USP47-202ENST00000339865 CCNIQ14094 377 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 ARID5BQ14865 1188 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 SLC39A14Q15043 492 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 TMEM270Q6UE05 265 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 LRRC71Q8N4P6 559 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 SEPT1Q8WYJ6 367 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 IQCMA0A1B0GVH7 501 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 MAGEA13PA6NCF6 341 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 KIF28PB7ZC32 967 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 MYBP10242 640 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 PEX3P56589 373 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 CUL4AQ13619 759 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 TFDP2Q14188 446 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 EXD1Q8NHP7 514 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 ARID1BQ8NFD5 2236 aaPredicted RBP13.45□□□□□ -0.26
USP47-202ENST00000339865 CCDC85CA6NKD9 419 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 MYL2P10916 166 aa13.45□□□□□ -0.26
USP47-202ENST00000339865 RXRBP28702 533 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms