RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 MRPL9Q9BYD2 267 aaKnown RBP24.03■■□□□ 1.44
SDC3-202ENST00000339394 METTL14Q9HCE5 456 aaKnown RBP24.03■■□□□ 1.44
SDC3-202ENST00000339394 C2CD2Q9Y426 696 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.03■■□□□ 1.44
SDC3-202ENST00000339394 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.03■■□□□ 1.44
SDC3-202ENST00000339394 SMTNL1A8MU46 457 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 BECN2A8MW95 431 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 VAMP7P51809 220 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 MARSP56192 900 aaKnown RBP24.03■■□□□ 1.44
SDC3-202ENST00000339394 MCCD1P59942 119 aaPredicted RBP24.03■■□□□ 1.44
SDC3-202ENST00000339394 DLG4P78352 724 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 GRIK3Q13003 919 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 NAB2Q15742 525 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 ZNF280BQ86YH2 543 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 CREBRFQ8IUR6 639 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 EFCAB13Q8IY85 973 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 CMTR2Q8IYT2 770 aaKnown RBP24.03■■□□□ 1.44
SDC3-202ENST00000339394 TMC2Q8TDI7 906 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 CNOT6LQ96LI5 555 aaKnown RBP24.03■■□□□ 1.44
SDC3-202ENST00000339394 TSPAN18Q96SJ8 248 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 DERAQ9Y315 318 aa24.03■■□□□ 1.44
SDC3-202ENST00000339394 TNNI1P19237 187 aa24.02■■□□□ 1.44
SDC3-202ENST00000339394 CLDN10P78369 228 aa24.02■■□□□ 1.44
SDC3-202ENST00000339394 RNASELQ05823 741 aaKnown RBP24.02■■□□□ 1.44
SDC3-202ENST00000339394 TMEM132DQ14C87 1099 aa24.02■■□□□ 1.44
SDC3-202ENST00000339394 LMBRD2Q68DH5 695 aaPredicted RBP24.02■■□□□ 1.44
SDC3-202ENST00000339394 USP37Q86T82 979 aa24.02■■□□□ 1.44
SDC3-202ENST00000339394 LUZP1Q86V48 1076 aa24.02■■□□□ 1.44
SDC3-202ENST00000339394 LRRC43Q8N309 656 aa24.02■■□□□ 1.44
SDC3-202ENST00000339394 C18orf25Q96B23 403 aaPredicted RBP24.02■■□□□ 1.44
SDC3-202ENST00000339394 HSD3B7Q9H2F3 369 aa24.02■■□□□ 1.44
SDC3-202ENST00000339394 HCSTQ9UBK5 93 aa24.02■■□□□ 1.44
SDC3-202ENST00000339394 COLQQ9Y215 455 aaPredicted RBP24.02■■□□□ 1.44
SDC3-202ENST00000339394 PTPRJQ12913 1337 aa24.02■■□□□ 1.44
SDC3-202ENST00000339394 LRRIQ3A6PVS8 624 aaPredicted RBP24.01■■□□□ 1.43
SDC3-202ENST00000339394 DDHD2O94830 711 aa24.01■■□□□ 1.43
SDC3-202ENST00000339394 TFAMQ00059 246 aaKnown RBP24.01■■□□□ 1.43
SDC3-202ENST00000339394 ENPEPQ07075 957 aa24.01■■□□□ 1.43
SDC3-202ENST00000339394 C1orf220Q5T0J3 134 aa24.01■■□□□ 1.43
SDC3-202ENST00000339394 PRPF38BQ5VTL8 546 aaKnown RBP24.01■■□□□ 1.43
SDC3-202ENST00000339394 CDKAL1Q5VV42 579 aa24.01■■□□□ 1.43
SDC3-202ENST00000339394 NT5DC4Q86YG4 428 aa24.01■■□□□ 1.43
SDC3-202ENST00000339394 WDR49Q8IV35 697 aa24.01■■□□□ 1.43
SDC3-202ENST00000339394 FAM84AQ96KN4 292 aa24.01■■□□□ 1.43
SDC3-202ENST00000339394 SLC38A7Q9NVC3 462 aa24.01■■□□□ 1.43
SDC3-202ENST00000339394 LCHNA4D1U4 455 aa24■■□□□ 1.43
SDC3-202ENST00000339394 B4GALT3O60512 393 aa24■■□□□ 1.43
SDC3-202ENST00000339394 TRIM49P0CI25 452 aa24■■□□□ 1.43
SDC3-202ENST00000339394 TRIM49CP0CI26 452 aa24■■□□□ 1.43
SDC3-202ENST00000339394 MYOGP15173 224 aa24■■□□□ 1.43
SDC3-202ENST00000339394 SOX4Q06945 474 aaPredicted RBP24■■□□□ 1.43
SDC3-202ENST00000339394 DSC1Q08554 894 aa24■■□□□ 1.43
SDC3-202ENST00000339394 FAM114A1Q8IWE2 563 aa24■■□□□ 1.43
SDC3-202ENST00000339394 TRIM59Q8IWR1 403 aa24■■□□□ 1.43
SDC3-202ENST00000339394 OR5B17Q8NGF7 314 aa24■■□□□ 1.43
SDC3-202ENST00000339394 SP7Q8TDD2 431 aaPredicted RBP24■■□□□ 1.43
SDC3-202ENST00000339394 ZNF516Q92618 1163 aa24■■□□□ 1.43
SDC3-202ENST00000339394 CGRRF1Q99675 332 aa24■■□□□ 1.43
SDC3-202ENST00000339394 INTS13Q9NVM9 706 aa24■■□□□ 1.43
SDC3-202ENST00000339394 TUBGCP4Q9UGJ1 667 aa24■■□□□ 1.43
SDC3-202ENST00000339394 UBQLN1Q9UMX0 589 aaKnown RBP24■■□□□ 1.43
SDC3-202ENST00000339394 COL4A6Q14031 1691 aa24■■□□□ 1.43
SDC3-202ENST00000339394 DUOXA2Q1HG44 320 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 DCAF17Q5H9S7 520 aaPredicted RBP23.99■■□□□ 1.43
SDC3-202ENST00000339394 TCERG1LQ5VWI1 586 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 TMEM130Q8N3G9 435 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 SLC35C1Q96A29 364 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 FAM193BQ96PV7 902 aaPredicted RBP23.99■■□□□ 1.43
SDC3-202ENST00000339394 MTMR12Q9C0I1 747 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 CWH43Q9H720 699 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 NRDE2Q9H7Z3 1164 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 GOLGA2P5Q9HBQ8 144 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 MAGEC2Q9UBF1 373 aaPredicted RBP23.99■■□□□ 1.43
SDC3-202ENST00000339394 MRPL42Q9Y6G3 142 aaKnown RBP23.99■■□□□ 1.43
SDC3-202ENST00000339394 KCNJ18B7U540 433 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 ZNF18P17022 549 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 CYP3A5P20815 502 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 PBX2P40425 430 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 TUSC3Q13454 348 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 KCNJ12Q14500 433 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 TCP11X2Q5H9J9 407 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 COLGALT2Q8IYK4 626 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 FIBCD1Q8N539 461 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 CACTINQ8WUQ7 758 aaKnown RBP23.99■■□□□ 1.43
SDC3-202ENST00000339394 PBX4Q9BYU1 374 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 DNAJB4Q9UDY4 337 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 PCDHA11Q9Y5I1 949 aa23.99■■□□□ 1.43
SDC3-202ENST00000339394 PTPRSQ13332 1948 aa23.98■■□□□ 1.43
SDC3-202ENST00000339394 A0A1W2PPC1 479 aa23.98■■□□□ 1.43
SDC3-202ENST00000339394 XPOTO43592 962 aaKnown RBP23.98■■□□□ 1.43
SDC3-202ENST00000339394 ZC3H11AO75152 810 aaKnown RBP eCLIP23.98■■□□□ 1.43
SDC3-202ENST00000339394 TMEM191BP0C7N4 346 aa23.98■■□□□ 1.43
SDC3-202ENST00000339394 GUCY2FP51841 1108 aa23.98■■□□□ 1.43
SDC3-202ENST00000339394 PPP3CAQ08209 521 aa23.98■■□□□ 1.43
SDC3-202ENST00000339394 RNF214Q8ND24 703 aa23.98■■□□□ 1.43
SDC3-202ENST00000339394 BEST2Q8NFU1 509 aa23.98■■□□□ 1.43
SDC3-202ENST00000339394 ANKRD36BP1Q96IX9 119 aa23.98■■□□□ 1.43
SDC3-202ENST00000339394 CACNG4Q9UBN1 327 aa23.98■■□□□ 1.43
SDC3-202ENST00000339394 CASTOR2A6NHX0 329 aa23.97■■□□□ 1.43
SDC3-202ENST00000339394 EEF1GP26641 437 aaKnown RBP23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms