RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 GCOM2Q9BZD3 368 aaPredicted RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 MTMR12Q9C0I1 747 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 NUCKS1Q9H1E3 243 aaKnown RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 CXCL16Q9H2A7 254 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 DEF6Q9H4E7 631 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 SPC25Q9HBM1 224 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 ACP6Q9NPH0 428 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 DDX20Q9UHI6 824 aaKnown RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 ADAMTS1Q9UHI8 967 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 GTF2IRD1Q9UHL9 959 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 DNAI1Q9UI46 699 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 PTCH2Q9Y6C5 1203 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 A0A1B0GUA9 196 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 SSU72P8A0A1W2PR75 194 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 CCP110O43303 1012 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 KPNA6O60684 536 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 NPTXRO95502 500 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 CST3P01034 146 aaPredicted RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 NFICP08651 508 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 CTSHP09668 335 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 STAG3L1P0CL83 205 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 MCF2P10911 925 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 EIF4BP23588 611 aaKnown RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 USP8P40818 1118 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 STAT1P42224 750 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 PIK3CAP42336 1068 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 GNG11P61952 73 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 ETF1P62495 437 aaKnown RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 TFAMQ00059 246 aaKnown RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 SNX17Q15036 470 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 CATSPER4Q7RTX7 472 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 USP37Q86T82 979 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 KIAA1328Q86T90 577 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 PXYLP1Q8TE99 480 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 SH3TC2Q8TF17 1288 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 SLC20A1Q8WUM9 679 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 JAKMIP2Q96AA8 810 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 ERO1AQ96HE7 468 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 PRIMPOLQ96LW4 560 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 NT5C1BQ96P26 610 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 PACSIN1Q9BY11 444 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 EIF2AQ9BY44 585 aaKnown RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 IFIH1Q9BYX4 1025 aaKnown RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 OSBPL7Q9BZF2 842 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 APOBEC3GQ9HC16 384 aaKnown RBP4.47□□□□□ -1.69
MCF2-201ENST00000338585 RNF19AQ9NV58 838 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 MYO6Q9UM54 1294 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 GUCA1BQ9UMX6 200 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 HES2Q9Y543 173 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 TRIM17Q9Y577 477 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 PCDHA13Q9Y5I0 950 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 DNAH12Q6ZR08 3092 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 ANK1P16157 1881 aa4.47□□□□□ -1.69
MCF2-201ENST00000338585 LACTBL1A8MY62 500 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 DDX3XO00571 662 aaKnown RBP eCLIP4.46□□□□□ -1.69
MCF2-201ENST00000338585 PHACTR2O75167 634 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 LCA5LO95447 670 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 FERP16591 822 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 CST5P28325 142 aaPredicted RBP4.46□□□□□ -1.69
MCF2-201ENST00000338585 GRK4P32298 578 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 PRKCIP41743 596 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 GUCY2FP51841 1108 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 MYL6P60660 151 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 KRT83P78385 493 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 ENPEPQ07075 957 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 NCOA4Q13772 614 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 SPA17Q15506 151 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 SLC10A6Q3KNW5 377 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 ARHGAP29Q52LW3 1261 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 TRAPPC11Q7Z392 1133 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 PALB2Q86YC2 1186 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 WDR49Q8IV35 697 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 RPF1Q9H9Y2 349 aaKnown RBP4.46□□□□□ -1.69
MCF2-201ENST00000338585 COLQQ9Y215 455 aaPredicted RBP4.46□□□□□ -1.69
MCF2-201ENST00000338585 PAXBP1Q9Y5B6 917 aa4.46□□□□□ -1.69
MCF2-201ENST00000338585 MACROD2A1Z1Q3 448 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 GOLGA6L9A6NEM1 432 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 CYP26A1O43174 497 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 CLSTN1O94985 981 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 IPO7O95373 1038 aaKnown RBP4.46□□□□□ -1.7
MCF2-201ENST00000338585 SGPL1O95470 568 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 CLTAP09496 248 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 GNAT1P11488 350 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 RFX1P22670 979 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 MAGEA1P43355 309 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 VAV2P52735 878 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 ACLYP53396 1101 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 MFAP3P55082 362 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 SLC18A3Q16572 532 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 ZNF569Q5MCW4 686 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 CCDC122Q5T0U0 273 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 JADE1Q6IE81 842 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 SERINC5Q86VE9 423 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 GLYCTKQ8IVS8 523 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 LNX1Q8TBB1 728 aaPredicted RBP4.46□□□□□ -1.7
MCF2-201ENST00000338585 SHC3Q92529 594 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 VTI1AQ96AJ9 217 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 SYT11Q9BT88 431 aa4.46□□□□□ -1.7
MCF2-201ENST00000338585 CELF4Q9BZC1 486 aaKnown RBP4.46□□□□□ -1.7
MCF2-201ENST00000338585 NXF3Q9H4D5 531 aaKnown RBP4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms