RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GTF2IRD1Q9UHL9 959 aa16.68■□□□□ 0.26
LIMS1-202ENST00000338045 GUCA1BQ9UMX6 200 aa16.68■□□□□ 0.26
LIMS1-202ENST00000338045 ATP8B3O60423 1300 aa16.68■□□□□ 0.26
LIMS1-202ENST00000338045 IL18RAPO95256 599 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 EIF4BP23588 611 aaKnown RBP16.67■□□□□ 0.26
LIMS1-202ENST00000338045 HOXA11P31270 313 aaPredicted RBP16.67■□□□□ 0.26
LIMS1-202ENST00000338045 CASQ1P31415 396 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 PIK3CAP42336 1068 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 ZNF569Q5MCW4 686 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 TAF2Q6P1X5 1199 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 VPS36Q86VN1 386 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 SLC30A5Q8TAD4 765 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 OSMRQ99650 979 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 PI4K2AQ9BTU6 479 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.67■□□□□ 0.26
LIMS1-202ENST00000338045 L2HGDHQ9H9P8 463 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 RPF1Q9H9Y2 349 aaKnown RBP16.67■□□□□ 0.26
LIMS1-202ENST00000338045 C1orf112Q9NSG2 853 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 NAGPAQ9UK23 515 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 TRIP12Q14669 1992 aaPredicted RBP16.67■□□□□ 0.26
LIMS1-202ENST00000338045 DDX3XO00571 662 aaKnown RBP eCLIP16.67■□□□□ 0.26
LIMS1-202ENST00000338045 RIOK3O14730 519 aaKnown RBP16.67■□□□□ 0.26
LIMS1-202ENST00000338045 STAG3L1P0CL83 205 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 DUOXA2Q1HG44 320 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 NBPF20Q3BBV1 942 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 WDR44Q5JSH3 913 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 SESTD1Q86VW0 696 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 EFCAB13Q8IY85 973 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 TMEM192Q8IY95 271 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 ERO1AQ96HE7 468 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 DUSP10Q9Y6W6 482 aa16.67■□□□□ 0.26
LIMS1-202ENST00000338045 HTTP42858 3142 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 ANK1P16157 1881 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 MEFVO15553 781 aaPredicted RBP16.66■□□□□ 0.26
LIMS1-202ENST00000338045 CXCL8P10145 99 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 OSTNP61366 133 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 NCOA4Q13772 614 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 NAB2Q15742 525 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 TRAPPC11Q7Z392 1133 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 SLC35F6Q8N357 371 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 MYRIPQ8NFW9 859 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 ADPGKQ9BRR6 497 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 MTMR12Q9C0I1 747 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.66■□□□□ 0.26
LIMS1-202ENST00000338045 SAGE1Q9NXZ1 904 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 GINS2Q9Y248 185 aa16.66■□□□□ 0.26
LIMS1-202ENST00000338045 ASGR1P07306 291 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 FGFR4P22455 802 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 CRYBB1P53674 252 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-202ENST00000338045 HTRA3P83110 453 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 SNX17Q15036 470 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 DCAF4L1Q3SXM0 396 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 ALKBH5Q6P6C2 394 aaKnown RBP16.65■□□□□ 0.26
LIMS1-202ENST00000338045 LNX1Q8TBB1 728 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-202ENST00000338045 RAET1EQ8TD07 263 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 FAM212AQ96EL1 285 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 ASB7Q9H672 318 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 APOBEC3GQ9HC16 384 aaKnown RBP16.65■□□□□ 0.26
LIMS1-202ENST00000338045 DDX20Q9UHI6 824 aaKnown RBP16.65■□□□□ 0.26
LIMS1-202ENST00000338045 FKTNO75072 461 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 ASS1P00966 412 aaKnown RBP16.65■□□□□ 0.26
LIMS1-202ENST00000338045 AXLP30530 894 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 GRM5P41594 1212 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 NCBP1Q09161 790 aaKnown RBP16.65■□□□□ 0.26
LIMS1-202ENST00000338045 KCNA10Q16322 511 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 SLC10A6Q3KNW5 377 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 CATSPER4Q7RTX7 472 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 TMEM40Q8WWA1 233 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 ELMO3Q96BJ8 720 aa16.65■□□□□ 0.26
LIMS1-202ENST00000338045 BTNL10A8MVZ5 291 aa16.64■□□□□ 0.25
LIMS1-202ENST00000338045 PHACTR2O75167 634 aa16.64■□□□□ 0.25
LIMS1-202ENST00000338045 CST3P01034 146 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-202ENST00000338045 PRMT2P55345 433 aa16.64■□□□□ 0.25
LIMS1-202ENST00000338045 NOP14P78316 857 aaKnown RBP16.64■□□□□ 0.25
LIMS1-202ENST00000338045 SPOPLQ6IQ16 392 aa16.64■□□□□ 0.25
LIMS1-202ENST00000338045 GDF6Q6KF10 455 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-202ENST00000338045 NOTUMQ6P988 496 aa16.64■□□□□ 0.25
LIMS1-202ENST00000338045 PCSK9Q8NBP7 692 aaKnown RBP16.64■□□□□ 0.25
LIMS1-202ENST00000338045 EPS8L1Q8TE68 723 aa16.64■□□□□ 0.25
LIMS1-202ENST00000338045 SECISBP2LQ93073 1101 aaKnown RBP16.64■□□□□ 0.25
LIMS1-202ENST00000338045 AGPAT1Q99943 283 aa16.64■□□□□ 0.25
LIMS1-202ENST00000338045 NOCTQ9UK39 431 aaKnown RBP16.64■□□□□ 0.25
LIMS1-202ENST00000338045 INTUQ9ULD6 942 aa16.64■□□□□ 0.25
LIMS1-202ENST00000338045 MROH7Q68CQ1 1323 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 LACTBL1A8MY62 500 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 CYP26A1O43174 497 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 TMEM191BP0C7N4 346 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 GTF2F1P35269 517 aaKnown RBP eCLIP16.63■□□□□ 0.25
LIMS1-202ENST00000338045 TFAMQ00059 246 aaKnown RBP16.63■□□□□ 0.25
LIMS1-202ENST00000338045 CUL2Q13617 745 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 ARHGEF6Q15052 776 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 SCARA3Q6AZY7 606 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 SMYD5Q6GMV2 418 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 SLC27A1Q6PCB7 646 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 APBB1IPQ7Z5R6 666 aaPredicted RBP16.63■□□□□ 0.25
LIMS1-202ENST00000338045 RPAINQ86UA6 219 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 GLYCTKQ8IVS8 523 aa16.63■□□□□ 0.25
LIMS1-202ENST00000338045 RNF10Q8N5U6 811 aaKnown RBP16.63■□□□□ 0.25
LIMS1-202ENST00000338045 ZNF296Q8WUU4 475 aaPredicted RBP16.63■□□□□ 0.25
LIMS1-202ENST00000338045 ANKRD36BP1Q96IX9 119 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms