RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 TRAIPQ9BWF2 469 aa17.91■□□□□ 0.46
SHOX-201ENST00000334060 LIMA1Q9UHB6 759 aaKnown RBP17.91■□□□□ 0.46
SHOX-201ENST00000334060 PDE4DIPQ5VU43 2346 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 SMIM28A0A1B0GU29 152 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 GRXCR1A8MXD5 290 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 ZNF623O75123 536 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 OFD1O75665 1012 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 TFAMQ00059 246 aaKnown RBP17.9■□□□□ 0.46
SHOX-201ENST00000334060 CCDC173Q0VFZ6 552 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 KCNH2Q12809 1159 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 IKBKEQ14164 716 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 MYBPC2Q14324 1141 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 TDRD10Q5VZ19 366 aaKnown RBP17.9■□□□□ 0.46
SHOX-201ENST00000334060 ZNF280BQ86YH2 543 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 CCDC51Q96ER9 411 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 PI4K2AQ9BTU6 479 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 MKNK1Q9BUB5 465 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 XPO4Q9C0E2 1151 aaKnown RBP17.9■□□□□ 0.46
SHOX-201ENST00000334060 TMEM117Q9H0C3 514 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 RSAD1Q9HA92 442 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 PES1O00541 588 aaKnown RBP17.9■□□□□ 0.46
SHOX-201ENST00000334060 VNN1O95497 513 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 CST3P01034 146 aaPredicted RBP17.9■□□□□ 0.46
SHOX-201ENST00000334060 FRMD5Q7Z6J6 570 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 CXorf38Q8TB03 319 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 APBB2Q92870 758 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 KIF12Q96FN5 646 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 FTHL17Q9BXU8 183 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 SIX4Q9UIU6 781 aa17.9■□□□□ 0.46
SHOX-201ENST00000334060 EPHB6O15197 1021 aa17.89■□□□□ 0.45
SHOX-201ENST00000334060 DDHD2O94830 711 aa17.89■□□□□ 0.45
SHOX-201ENST00000334060 ARHGEF15O94989 841 aa17.89■□□□□ 0.45
SHOX-201ENST00000334060 CAVIN2O95810 425 aa17.89■□□□□ 0.45
SHOX-201ENST00000334060 LDHAP00338 332 aaKnown RBP17.89■□□□□ 0.45
SHOX-201ENST00000334060 ACTN1P12814 892 aa17.89■□□□□ 0.45
SHOX-201ENST00000334060 TNNI1P19237 187 aa17.89■□□□□ 0.45
SHOX-201ENST00000334060 RFC2P35250 354 aa17.89■□□□□ 0.45
SHOX-201ENST00000334060 SHHQ15465 462 aa17.89■□□□□ 0.45
SHOX-201ENST00000334060 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.89■□□□□ 0.45
SHOX-201ENST00000334060 TAS1R2Q8TE23 839 aa17.89■□□□□ 0.45
SHOX-201ENST00000334060 CNTN3Q9P232 1028 aa17.89■□□□□ 0.45
SHOX-201ENST00000334060 DNAJB4Q9UDY4 337 aa17.89■□□□□ 0.45
SHOX-201ENST00000334060 AJAP1Q9UKB5 411 aaPredicted RBP17.89■□□□□ 0.45
SHOX-201ENST00000334060 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.89■□□□□ 0.45
SHOX-201ENST00000334060 RALGAPA2Q2PPJ7 1873 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 FGBP02675 491 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 PPP2R3AQ06190 1150 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 KCNMA1Q12791 1236 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 PPIGQ13427 754 aaKnown RBP eCLIP17.88■□□□□ 0.45
SHOX-201ENST00000334060 SPOPLQ6IQ16 392 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 INTS8Q75QN2 995 aaKnown RBP17.88■□□□□ 0.45
SHOX-201ENST00000334060 SV2AQ7L0J3 742 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 C1orf127Q8N9H9 656 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 CASD1Q96PB1 797 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 CGRRF1Q99675 332 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 NDST4Q9H3R1 872 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 PDCD11Q14690 1871 aaKnown RBP17.88■□□□□ 0.45
SHOX-201ENST00000334060 CASTOR2A6NHX0 329 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 SERPINC1P01008 464 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 MYOGP15173 224 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 EEF1GP26641 437 aaKnown RBP17.88■□□□□ 0.45
SHOX-201ENST00000334060 VWA3BQ502W6 1294 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 XKR4Q5GH76 650 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 GJB7Q6PEY0 223 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 C3orf58Q8NDZ4 430 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 PPP1R10Q96QC0 940 aaKnown RBP17.88■□□□□ 0.45
SHOX-201ENST00000334060 TMEM161AQ9NX61 479 aa17.88■□□□□ 0.45
SHOX-201ENST00000334060 MAGEC2Q9UBF1 373 aaPredicted RBP17.88■□□□□ 0.45
SHOX-201ENST00000334060 LCHNA4D1U4 455 aa17.87■□□□□ 0.45
SHOX-201ENST00000334060 PARNO95453 639 aaKnown RBP17.87■□□□□ 0.45
SHOX-201ENST00000334060 C4BPAP04003 597 aaKnown RBP17.87■□□□□ 0.45
SHOX-201ENST00000334060 ITGB1P05556 798 aa17.87■□□□□ 0.45
SHOX-201ENST00000334060 SLC9A1P19634 815 aa17.87■□□□□ 0.45
SHOX-201ENST00000334060 FMO5P49326 533 aa17.87■□□□□ 0.45
SHOX-201ENST00000334060 RABGGTBP53611 331 aa17.87■□□□□ 0.45
SHOX-201ENST00000334060 CLDN10P78369 228 aa17.87■□□□□ 0.45
SHOX-201ENST00000334060 ZBTB6Q15916 424 aa17.87■□□□□ 0.45
SHOX-201ENST00000334060 MAN2A1Q16706 1144 aa17.87■□□□□ 0.45
SHOX-201ENST00000334060 C15orf39Q6ZRI6 1047 aa17.87■□□□□ 0.45
SHOX-201ENST00000334060 HASPINQ8TF76 798 aa17.87■□□□□ 0.45
SHOX-201ENST00000334060 A0A1B0GTH6 734 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 LRRC10BA6NIK2 292 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 KRT13P13646 458 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 RAB27AP51159 221 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 YARSP54577 528 aaKnown RBP17.86■□□□□ 0.45
SHOX-201ENST00000334060 GOLGA8FQ08AF8 430 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 GOLGA8DPQ0D2H9 430 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 LRMPQ12912 555 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 DPY19L2P1Q6NXN4 242 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 TMEM173Q86WV6 379 aaPredicted RBP17.86■□□□□ 0.45
SHOX-201ENST00000334060 RPUSD2Q8IZ73 545 aaKnown RBP17.86■□□□□ 0.45
SHOX-201ENST00000334060 TOP1MTQ969P6 601 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 FNBP1Q96RU3 617 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 C1orf112Q9NSG2 853 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 TBC1D13Q9NVG8 400 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 PCDHB7Q9Y5E2 793 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 FNDC1Q4ZHG4 1894 aaPredicted RBP17.86■□□□□ 0.45
SHOX-201ENST00000334060 TBKBP1A7MCY6 615 aa17.86■□□□□ 0.45
SHOX-201ENST00000334060 KIAA0391O15091 583 aaKnown RBP17.86■□□□□ 0.45
SHOX-201ENST00000334060 MAPK13O15264 365 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms