RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 C2CD2LO14523 706 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 OGTO15294 1046 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 TADA2AO75478 443 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 GCNT3O95395 438 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 CLTAP09496 248 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 CNPP09543 421 aaKnown RBP17.26■□□□□ 0.35
CLN3-201ENST00000333496 PFKFB1P16118 471 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 AMPD3Q01432 767 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 DSG1Q02413 1049 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 UPP1Q16831 310 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 L1TD1Q5T7N2 865 aaKnown RBP17.26■□□□□ 0.35
CLN3-201ENST00000333496 SMRP1Q8NCR6 262 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 C3orf58Q8NDZ4 430 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 GLIS3Q8NEA6 775 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 KLHL5Q96PQ7 755 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 UHRF1Q96T88 793 aaPredicted RBP17.26■□□□□ 0.35
CLN3-201ENST00000333496 MSTO1Q9BUK6 570 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 SCAND2PQ9GZW5 306 aaPredicted RBP17.26■□□□□ 0.35
CLN3-201ENST00000333496 MAGEF1Q9HAY2 307 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 MRPL17Q9NRX2 175 aaKnown RBP17.26■□□□□ 0.35
CLN3-201ENST00000333496 SERTAD1Q9UHV2 236 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 HPSEQ9Y251 543 aa17.26■□□□□ 0.35
CLN3-201ENST00000333496 ACTN4O43707 911 aaKnown RBP17.25■□□□□ 0.35
CLN3-201ENST00000333496 URODP06132 367 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 ADSSP30520 456 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 GLUD2P49448 558 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 ASIC1P78348 528 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 NUCB2P80303 420 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 ENOX2Q16206 610 aaKnown RBP17.25■□□□□ 0.35
CLN3-201ENST00000333496 PUS10Q3MIT2 529 aaKnown RBP17.25■□□□□ 0.35
CLN3-201ENST00000333496 SYCE2Q6PIF2 218 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 TMEM130Q8N3G9 435 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 SLC22A17Q8WUG5 538 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 C18orf25Q96B23 403 aaPredicted RBP17.25■□□□□ 0.35
CLN3-201ENST00000333496 BLZF1Q9H2G9 400 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 C2orf16Q68DN1 1984 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 TTC28Q96AY4 2481 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 FAM237AA0A1B0GTK4 181 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 TMEM189-UBE2V1I3L0A0 370 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 PRPF6O94906 941 aaKnown RBP17.25■□□□□ 0.35
CLN3-201ENST00000333496 ADRB2P07550 413 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 EPCAMP16422 314 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 AFMP43652 599 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 SPAG1Q07617 926 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 EHHADHQ08426 723 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 SMAD4Q13485 552 aaKnown RBP17.25■□□□□ 0.35
CLN3-201ENST00000333496 CUL4BQ13620 913 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 USP41Q3LFD5 358 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 ANKRD54Q6NXT1 300 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 GRAMD1CQ8IYS0 662 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 ACCSQ96QU6 501 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 PLEKHA5Q9HAU0 1116 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 SLC38A7Q9NVC3 462 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 CPSF3Q9UKF6 684 aaKnown RBP17.25■□□□□ 0.35
CLN3-201ENST00000333496 PCDHB13Q9Y5F0 798 aa17.25■□□□□ 0.35
CLN3-201ENST00000333496 SF3B1O75533 1304 aaKnown RBP eCLIP17.24■□□□□ 0.353e-9■■■■■ 164.7
CLN3-201ENST00000333496 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.24■□□□□ 0.35
CLN3-201ENST00000333496 LACTBL1A8MY62 500 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 B3GAT3O94766 335 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 SLFN14P0C7P3 912 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 ACOT2P49753 483 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 SMAD2Q15796 467 aaKnown RBP17.24■□□□□ 0.35
CLN3-201ENST00000333496 ZBTB6Q15916 424 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 KYAT1Q16773 422 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 RTP2Q5QGT7 225 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 SLFN12LQ6IEE8 588 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 DCLRE1AQ6PJP8 1040 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 CASP10Q92851 521 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 UROC1Q96N76 676 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 PYM1Q9BRP8 204 aaKnown RBP17.24■□□□□ 0.35
CLN3-201ENST00000333496 S1PR5Q9H228 398 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 RXFP1Q9HBX9 757 aa17.24■□□□□ 0.35
CLN3-201ENST00000333496 AGO2Q9UKV8 859 aaKnown RBP17.24■□□□□ 0.35
CLN3-201ENST00000333496 SCN1AP35498 2009 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 CUL9Q8IWT3 2517 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 TEX28O15482 410 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 KLRC2P26717 231 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 HOXD13P35453 343 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 CLCN4P51793 760 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 NDUFA8P51970 172 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 ALCAMQ13740 583 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 FAM171A1Q5VUB5 890 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 KIAA1841Q6NSI8 718 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 CRELD2Q6UXH1 353 aaPredicted RBP17.23■□□□□ 0.35
CLN3-201ENST00000333496 UNC13DQ70J99 1090 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 TMEM87AQ8NBN3 555 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 ZSWIM2Q8NEG5 633 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 EMILIN2Q9BXX0 1053 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 RPF1Q9H9Y2 349 aaKnown RBP17.23■□□□□ 0.35
CLN3-201ENST00000333496 TUBGCP4Q9UGJ1 667 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 EXOC7Q9UPT5 735 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 SSX2IPQ9Y2D8 614 aa17.23■□□□□ 0.35
CLN3-201ENST00000333496 PODXLO00592 558 aa17.22■□□□□ 0.35
CLN3-201ENST00000333496 BRCC3P46736 316 aa17.22■□□□□ 0.35
CLN3-201ENST00000333496 PPP2R3AQ06190 1150 aa17.22■□□□□ 0.35
CLN3-201ENST00000333496 TPRNQ4KMQ1 711 aa17.22■□□□□ 0.35
CLN3-201ENST00000333496 PRSS55Q6UWB4 352 aaPredicted RBP17.22■□□□□ 0.35
CLN3-201ENST00000333496 EPM2AIP1Q7L775 607 aaPredicted RBP17.22■□□□□ 0.35
CLN3-201ENST00000333496 GPR65Q8IYL9 337 aa17.22■□□□□ 0.35
CLN3-201ENST00000333496 CEP57L1Q8IYX8 460 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms