RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 BICD1Q96G01 975 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 NTPCRQ9BSD7 190 aaKnown RBP21.37■■□□□ 1.01
LIME1-201ENST00000309546 SLC38A7Q9NVC3 462 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 LARSQ9P2J5 1176 aaKnown RBP21.37■■□□□ 1.01
LIME1-201ENST00000309546 FBXW11Q9UKB1 542 aa21.37■■□□□ 1.01
LIME1-201ENST00000309546 SLC26A4O43511 780 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 N4BP1O75113 896 aaKnown RBP21.36■■□□□ 1.01
LIME1-201ENST00000309546 TOM1L1O75674 476 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 ZMYND10O75800 440 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 PLCG1P19174 1290 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 TKTP29401 623 aaKnown RBP21.36■■□□□ 1.01
LIME1-201ENST00000309546 BRCC3P46736 316 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 NHLH1Q02575 133 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 ARSHQ5FYA8 562 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 GET4Q7L5D6 327 aaPredicted RBP21.36■■□□□ 1.01
LIME1-201ENST00000309546 C3orf58Q8NDZ4 430 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 ZMAT2Q96NC0 199 aaKnown RBP21.36■■□□□ 1.01
LIME1-201ENST00000309546 REEP2Q9BRK0 252 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 RHOBTB2Q9BYZ6 727 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 PRKD2Q9BZL6 878 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 ZDBF2Q9HCK1 2354 aa21.36■■□□□ 1.01
LIME1-201ENST00000309546 DOCK8Q8NF50 2099 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 PODXLO00592 558 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 ADAM12O43184 909 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 FAM13AO94988 1023 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 KRT18P05783 430 aaKnown RBP21.35■■□□□ 1.01
LIME1-201ENST00000309546 PDCP20941 246 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 FGFR3P22607 806 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 LONP1P36776 959 aaKnown RBP21.35■■□□□ 1.01
LIME1-201ENST00000309546 MCM6Q14566 821 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 KARSQ15046 597 aaKnown RBP21.35■■□□□ 1.01
LIME1-201ENST00000309546 XKR4Q5GH76 650 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 ALKAL1Q6UXT8 129 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 PRSS33Q8NF86 280 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 LRRC15Q8TF66 581 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 KCNK12Q9HB15 430 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 ODF2LQ9ULJ1 636 aa21.35■■□□□ 1.01
LIME1-201ENST00000309546 DOCK6Q96HP0 2047 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 H0YCG3 227 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 K7ENM7 598 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 TRAPPC3O43617 180 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 C8AP07357 584 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 HOXD11P31277 338 aaPredicted RBP21.34■■□□□ 1.01
LIME1-201ENST00000309546 OR1D2P34982 312 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 NCKAP1LP55160 1127 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 TDGQ13569 410 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 PPM1LQ5SGD2 360 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 CD300LGQ6UXG3 332 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 HAUS6Q7Z4H7 955 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 MYCT1Q8N699 235 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 RAD54LQ92698 747 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 DDX27Q96GQ7 796 aaKnown RBP21.34■■□□□ 1.01
LIME1-201ENST00000309546 MYADMQ96S97 322 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 MFSD1Q9H3U5 465 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 ZHX3Q9H4I2 956 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 BLOC1S4Q9NUP1 217 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 CNTN3Q9P232 1028 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 MTRRQ9UBK8 725 aa21.34■■□□□ 1.01
LIME1-201ENST00000309546 CLDN3O15551 220 aa21.33■■□□□ 1.01
LIME1-201ENST00000309546 KCNE1P15382 129 aa21.33■■□□□ 1.01
LIME1-201ENST00000309546 AVPR2P30518 371 aa21.33■■□□□ 1.01
LIME1-201ENST00000309546 ZPBP2Q6X784 338 aa21.33■■□□□ 1.01
LIME1-201ENST00000309546 C18orf25Q96B23 403 aaPredicted RBP21.33■■□□□ 1.01
LIME1-201ENST00000309546 FOXD4L1Q9NU39 408 aa21.33■■□□□ 1.01
LIME1-201ENST00000309546 POLIQ9UNA4 740 aa21.33■■□□□ 1.01
LIME1-201ENST00000309546 NUB1Q9Y5A7 615 aa21.33■■□□□ 1.01
LIME1-201ENST00000309546 CLIC4Q9Y696 253 aa21.33■■□□□ 1.01
LIME1-201ENST00000309546 CDY1Q9Y6F8 540 aa21.33■■□□□ 1.01
LIME1-201ENST00000309546 CCL16O15467 120 aa21.32■■□□□ 1
LIME1-201ENST00000309546 MEFVO15553 781 aaPredicted RBP21.32■■□□□ 1
LIME1-201ENST00000309546 TBCAO75347 108 aaKnown RBP21.32■■□□□ 1
LIME1-201ENST00000309546 CXCL8P10145 99 aa21.32■■□□□ 1
LIME1-201ENST00000309546 MARCKSP29966 332 aaPredicted RBP21.32■■□□□ 1
LIME1-201ENST00000309546 LIG4P49917 911 aa21.32■■□□□ 1
LIME1-201ENST00000309546 SPECC1Q5M775 1068 aa21.32■■□□□ 1
LIME1-201ENST00000309546 ANKS3Q6ZW76 656 aa21.32■■□□□ 1
LIME1-201ENST00000309546 GRASPQ7Z6J2 395 aaPredicted RBP21.32■■□□□ 1
LIME1-201ENST00000309546 ALYREFQ86V81 257 aaKnown RBP21.32■■□□□ 1
LIME1-201ENST00000309546 SLC7A14Q8TBB6 771 aa21.32■■□□□ 1
LIME1-201ENST00000309546 RSAD2Q8WXG1 361 aa21.32■■□□□ 1
LIME1-201ENST00000309546 IGSF9Q9P2J2 1179 aa21.32■■□□□ 1
LIME1-201ENST00000309546 EPS15L1Q9UBC2 864 aa21.32■■□□□ 1
LIME1-201ENST00000309546 WDFY4Q6ZS81 3184 aa21.32■■□□□ 1
LIME1-201ENST00000309546 HNRNPDLO14979 420 aaKnown RBP21.31■■□□□ 1
LIME1-201ENST00000309546 PAPLNO95428 1278 aa21.31■■□□□ 1
LIME1-201ENST00000309546 HNRNPA1P09651 372 aaKnown RBP eCLIP21.31■■□□□ 1
LIME1-201ENST00000309546 PTPN5P54829 565 aa21.31■■□□□ 1
LIME1-201ENST00000309546 NTHL1P78549 312 aa21.31■■□□□ 1
LIME1-201ENST00000309546 CEBPZQ03701 1054 aaKnown RBP21.31■■□□□ 1
LIME1-201ENST00000309546 SPAG1Q07617 926 aa21.31■■□□□ 1
LIME1-201ENST00000309546 MCL1Q07820 350 aa21.31■■□□□ 1
LIME1-201ENST00000309546 RAB33AQ14088 237 aa21.31■■□□□ 1
LIME1-201ENST00000309546 SLC10A6Q3KNW5 377 aa21.31■■□□□ 1
LIME1-201ENST00000309546 FAM173BQ6P4H8 233 aa21.31■■□□□ 1
LIME1-201ENST00000309546 RSPO2Q6UXX9 243 aaPredicted RBP21.31■■□□□ 1
LIME1-201ENST00000309546 LARP4BQ92615 738 aaKnown RBP21.31■■□□□ 1
LIME1-201ENST00000309546 PRRX2Q99811 253 aa21.31■■□□□ 1
LIME1-201ENST00000309546 HAPLN2Q9GZV7 340 aa21.31■■□□□ 1
LIME1-201ENST00000309546 PARVGQ9HBI0 331 aa21.31■■□□□ 1
LIME1-201ENST00000309546 FBXL21Q9UKT6 434 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms