RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 MRPL1Q9BYD6 325 aaKnown RBP18.28■□□□□ 0.52
SYNPO-201ENST00000307662 PNPLA7Q6ZV29 1317 aa18.28■□□□□ 0.52
SYNPO-201ENST00000307662 ANGPT2O15123 496 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 ENO3P13929 434 aaPredicted RBP18.27■□□□□ 0.52
SYNPO-201ENST00000307662 BRD2P25440 801 aaKnown RBP18.27■□□□□ 0.52
SYNPO-201ENST00000307662 SERPINB9P50453 376 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 ZNF200P98182 395 aaPredicted RBP18.27■□□□□ 0.52
SYNPO-201ENST00000307662 KPNB1Q14974 876 aaKnown RBP18.27■□□□□ 0.52
SYNPO-201ENST00000307662 FAM102AQ5T9C2 384 aaPredicted RBP18.27■□□□□ 0.52
SYNPO-201ENST00000307662 ZNF555Q8NEP9 628 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 TMA16Q96EY4 203 aaKnown RBP18.27■□□□□ 0.52
SYNPO-201ENST00000307662 CCT7Q99832 543 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 NCOA3Q9Y6Q9 1424 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 MAGEA4P43358 317 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 TEX2Q8IWB9 1127 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 CASKIN2Q8WXE0 1202 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 ULK4Q96C45 1275 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 HIC2Q96JB3 615 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 LXNQ9BS40 222 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 ZNF609O15014 1411 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 TRADDQ15628 312 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 CYFIP1Q7L576 1253 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 IFT43Q96FT9 208 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 TSC22D4Q9Y3Q8 395 aa18.27■□□□□ 0.52
SYNPO-201ENST00000307662 ABCB11O95342 1321 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 TMEM253P0C7T8 217 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 STK4Q13043 487 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 SMAD1Q15797 465 aaKnown RBP18.27■□□□□ 0.51
SYNPO-201ENST00000307662 SYNE4Q8N205 404 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 SLC44A5Q8NCS7 719 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 FAM129AQ9BZQ8 928 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 STAP1Q9ULZ2 295 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 MAP3K10Q02779 954 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 TRIM28Q13263 835 aaKnown RBP18.27■□□□□ 0.51
SYNPO-201ENST00000307662 RABL6Q3YEC7 729 aaPredicted RBP18.27■□□□□ 0.51
SYNPO-201ENST00000307662 DSTYKQ6XUX3 929 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 SYN2Q92777 582 aaPredicted RBP18.27■□□□□ 0.51
SYNPO-201ENST00000307662 SERPINB12Q96P63 405 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 TEX12Q9BXU0 123 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 UNC45AQ9H3U1 944 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 DHX35Q9H5Z1 703 aaKnown RBP18.27■□□□□ 0.51
SYNPO-201ENST00000307662 MANSC1Q9H8J5 431 aa18.27■□□□□ 0.51
SYNPO-201ENST00000307662 NPHP3-ACAD11A0A0J9YXS1 232 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 DSG1Q02413 1049 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 PTK7Q13308 1070 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 BTNL9Q6UXG8 535 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 ADGRF4Q8IZF3 695 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 KLHL11Q9NVR0 708 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 SFNP31947 248 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 KLK7P49862 253 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 ACTR2P61160 394 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 CCNA1P78396 465 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 ZNF568Q3ZCX4 644 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 ZC3H12BQ5HYM0 836 aaKnown RBP18.26■□□□□ 0.51
SYNPO-201ENST00000307662 RCSD1Q6JBY9 416 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 RNF135Q8IUD6 432 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 GALNT4Q8N4A0 578 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 PPP1R36Q96LQ0 422 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 OSBPL8Q9BZF1 889 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 CRB1P82279 1406 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 SNAP23O00161 211 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 NEMP1O14524 444 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 ZNF189O75820 626 aaPredicted RBP18.26■□□□□ 0.51
SYNPO-201ENST00000307662 CYP19A1P11511 503 aaPredicted RBP18.26■□□□□ 0.51
SYNPO-201ENST00000307662 CIITAP33076 1130 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 EEPD1Q7L9B9 569 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 PRPF38AQ8NAV1 312 aaKnown RBP18.26■□□□□ 0.51
SYNPO-201ENST00000307662 ATXN7L3BQ96GX2 97 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 ZC3H7BQ9UGR2 993 aaKnown RBP18.26■□□□□ 0.51
SYNPO-201ENST00000307662 XPO7Q9UIA9 1087 aaKnown RBP18.26■□□□□ 0.51
SYNPO-201ENST00000307662 GH2P01242 217 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 FMO5P49326 533 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 ITGA8P53708 1063 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 DPP9Q86TI2 863 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 PRPF39Q86UA1 669 aaKnown RBP18.26■□□□□ 0.51
SYNPO-201ENST00000307662 FAM167AQ96KS9 214 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 NARFQ9UHQ1 456 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 BLOC1S6Q9UL45 172 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 ATP11BQ9Y2G3 1177 aa18.26■□□□□ 0.51
SYNPO-201ENST00000307662 H3BQF6 201 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 TARSP26639 723 aaKnown RBP18.25■□□□□ 0.51
SYNPO-201ENST00000307662 KLRC1P26715 233 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 PPP1R3GB7ZBB8 358 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 KCNN4O15554 427 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 NMT1P30419 496 aaKnown RBP18.25■□□□□ 0.51
SYNPO-201ENST00000307662 SLC44A4Q53GD3 710 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 EFHC2Q5JST6 749 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 IGDCC4Q8TDY8 1250 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 SEPT8Q92599 483 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 PAWRQ96IZ0 340 aaKnown RBP18.25■□□□□ 0.51
SYNPO-201ENST00000307662 HLA-DPA1P20036 260 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 AP3M2P53677 418 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 ABCE1P61221 599 aaKnown RBP18.25■□□□□ 0.51
SYNPO-201ENST00000307662 PLD3Q8IV08 490 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 ABI1Q8IZP0 508 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 TTC39CQ8N584 583 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 ZBTB10Q96DT7 871 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 SENP7Q9BQF6 1050 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 TMBIM4Q9HC24 238 aa18.25■□□□□ 0.51
SYNPO-201ENST00000307662 SPAG6O75602 509 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms