RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CEP89Q96ST8 783 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 BCCIPQ9P287 314 aaKnown RBP eCLIP21.49■■□□□ 1.03
VPS53-201ENST00000291074 FBXO40Q9UH90 709 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 ANAPC7Q9UJX3 599 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 MYPNQ86TC9 1320 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 FAM187AA6NFU0 413 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 UNGP13051 313 aaPredicted RBP21.49■■□□□ 1.03
VPS53-201ENST00000291074 CLDN10P78369 228 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 DRP2Q13474 957 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 MTMR3Q13615 1198 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 R3HDM1Q15032 1099 aaKnown RBP21.49■■□□□ 1.03
VPS53-201ENST00000291074 CCDC137Q6PK04 289 aaKnown RBP21.49■■□□□ 1.03
VPS53-201ENST00000291074 SLC13A5Q86YT5 568 aaPredicted RBP21.49■■□□□ 1.03
VPS53-201ENST00000291074 CHST13Q8NET6 341 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 FBXO25Q8TCJ0 367 aa21.49■■□□□ 1.03
VPS53-201ENST00000291074 APOBEC3GQ9HC16 384 aaKnown RBP21.49■■□□□ 1.03
VPS53-201ENST00000291074 RBAKQ9NYW8 714 aaPredicted RBP21.49■■□□□ 1.03
VPS53-201ENST00000291074 GSTTP1A0A1W2PQM5 241 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 TRIM66O15016 1216 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 ZC3H11AO75152 810 aaKnown RBP eCLIP21.48■■□□□ 1.03
VPS53-201ENST00000291074 CHRNA3P32297 505 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 ARL2P36404 184 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 KCNJ1P48048 391 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 SH3D19Q5HYK7 790 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 DAB2IPQ5VWQ8 1189 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 ENOSF1Q7L5Y1 443 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 DNERQ8NFT8 737 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 MORC4Q8TE76 937 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 SLC7A3Q8WY07 619 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 MSTO1Q9BUK6 570 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 CD2APQ9Y5K6 639 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 STYXL1Q9Y6J8 313 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 TTLL13PA6NNM8 815 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 MYO1CO00159 1063 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 RARAP10276 462 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 RRM1P23921 792 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 NAMPTP43490 491 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 RPL21P46778 160 aaKnown RBP21.48■■□□□ 1.03
VPS53-201ENST00000291074 SIX1Q15475 284 aaPredicted RBP21.48■■□□□ 1.03
VPS53-201ENST00000291074 CLUL1Q15846 466 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 WDR44Q5JSH3 913 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 LBX2Q6XYB7 198 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 PASD1Q8IV76 773 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 TXLNGYQ9BZA5 131 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 GRHL1Q9NZI5 618 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 PTPN22Q9Y2R2 807 aa21.48■■□□□ 1.03
VPS53-201ENST00000291074 UMODL1Q5DID0 1318 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 PPFIA2O75334 1257 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 FARP2O94887 1054 aaPredicted RBP21.47■■□□□ 1.03
VPS53-201ENST00000291074 HSPA6P17066 643 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 MCOLN2Q8IZK6 566 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 C1orf131Q8NDD1 294 aaKnown RBP21.47■■□□□ 1.03
VPS53-201ENST00000291074 KIAA1586Q9HCI6 787 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.47■■□□□ 1.03
VPS53-201ENST00000291074 MROH7Q68CQ1 1323 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 OTOFQ9HC10 1997 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 SOWAHBA6NEL2 793 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 CLDN3O15551 220 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 MAPK4P31152 587 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 OR5B17Q8NGF7 314 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 CYFIP2Q96F07 1278 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 SGIP1Q9BQI5 828 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 PCYOX1Q9UHG3 505 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 RASAL2Q9UJF2 1139 aa21.47■■□□□ 1.03
VPS53-201ENST00000291074 DCDC2CA8MYV0 355 aa21.46■■□□□ 1.03
VPS53-201ENST00000291074 SCP2P22307 547 aa21.46■■□□□ 1.03
VPS53-201ENST00000291074 RWDD2BP57060 319 aa21.46■■□□□ 1.03
VPS53-201ENST00000291074 CAPSQ13938 189 aa21.46■■□□□ 1.03
VPS53-201ENST00000291074 UBAP2Q5T6F2 1119 aaKnown RBP21.46■■□□□ 1.03
VPS53-201ENST00000291074 NCAPG2Q86XI2 1143 aa21.46■■□□□ 1.03
VPS53-201ENST00000291074 PCDHB2Q9Y5E7 798 aa21.46■■□□□ 1.03
VPS53-201ENST00000291074 IGKV6D-21A0A0A0MT36 114 aa21.46■■□□□ 1.03
VPS53-201ENST00000291074 ACO1P21399 889 aaKnown RBP21.46■■□□□ 1.03
VPS53-201ENST00000291074 LSP1P33241 339 aa21.46■■□□□ 1.03
VPS53-201ENST00000291074 EPB41L4BQ9H329 900 aa21.46■■□□□ 1.03
VPS53-201ENST00000291074 ENPEPQ07075 957 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 PAGR1Q9BTK6 254 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 NIFKQ9BYG3 293 aaKnown RBP21.45■■□□□ 1.02
VPS53-201ENST00000291074 PPP2R3BQ9Y5P8 575 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 A0A0G2JMZ2 1700 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 GGPS1O95749 300 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 PIGRP01833 764 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 SHBGP04278 402 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 COILP38432 576 aaPredicted RBP21.45■■□□□ 1.02
VPS53-201ENST00000291074 KRT71Q3SY84 523 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 EMC10Q5UCC4 262 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 TMEM270Q6UE05 265 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 GADL1Q6ZQY3 521 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 C10orf67Q8IYJ2 551 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 CCDC105Q8IYK2 499 aa21.45■■□□□ 1.02
VPS53-201ENST00000291074 A0A0B4J269 797 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 CUL2Q13617 745 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 C1orf54Q8WWF1 131 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 NUB1Q9Y5A7 615 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 PCDHB4Q9Y5E5 795 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 MARK3P27448 753 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 MDH1P40925 334 aaKnown RBP21.44■■□□□ 1.02
VPS53-201ENST00000291074 CYP1B1Q16678 543 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 LY6KQ17RY6 165 aa21.44■■□□□ 1.02
VPS53-201ENST00000291074 GPC2Q8N158 579 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms