RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 NEFHP12036 1026 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 PRKAR2AP13861 404 aaKnown RBP12.38□□□□□ -0.43
VPS4A-201ENST00000254950 PTENP60484 403 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 GPAT2Q6NUI2 795 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 MAP7D3Q8IWC1 876 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 SIX6OS1Q8N1H7 587 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 THEM5Q8N1Q8 247 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 PRM3Q9NNZ6 103 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 COL1A2P08123 1366 aa12.38□□□□□ -0.43
VPS4A-201ENST00000254950 LAMB1P07942 1786 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 TNS1Q9HBL0 1735 aaKnown RBP12.37□□□□□ -0.43
VPS4A-201ENST00000254950 FKTNO75072 461 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 CXCL8P10145 99 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 HSPA6P17066 643 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 GBP2P32456 591 aaPredicted RBP12.37□□□□□ -0.43
VPS4A-201ENST00000254950 IFRD2Q12894 506 aaPredicted RBP12.37□□□□□ -0.43
VPS4A-201ENST00000254950 ZNF564Q8TBZ8 553 aaPredicted RBP12.37□□□□□ -0.43
VPS4A-201ENST00000254950 TNIP3Q96KP6 325 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 BCCIPQ9P287 314 aaKnown RBP eCLIP12.37□□□□□ -0.43
VPS4A-201ENST00000254950 MYZAPP0CAP1 466 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 MTHFD1LQ6UB35 978 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 GLB1LQ6UWU2 654 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 CCDC25Q86WR0 208 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 AFAP1L1Q8TED9 768 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 WDR24Q96S15 920 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 NUP85Q9BW27 656 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 CCDC113Q9H0I3 377 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 A0A087X0T9 212 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 F8VZ95 297 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 WEE2P0C1S8 567 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 FAM228BP0C875 321 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 MARSP56192 900 aaKnown RBP12.37□□□□□ -0.43
VPS4A-201ENST00000254950 GHRHRQ02643 423 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 STILQ15468 1287 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 ZCWPW2Q504Y3 356 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 SLC27A1Q6PCB7 646 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 ZNF677Q86XU0 584 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 ASB7Q9H672 318 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 XPNPEP1Q9NQW7 623 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 DPP3Q9NY33 737 aa12.37□□□□□ -0.43
VPS4A-201ENST00000254950 LPXNO60711 386 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 CABYRO75952 493 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 SKIP12755 728 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 SMPD1P17405 629 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 AXLP30530 894 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 SP2Q02086 613 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 NFIL3Q16649 462 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 SND1Q7KZF4 910 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS4A-201ENST00000254950 HDXQ7Z353 690 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 SAPCD2Q86UD0 394 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 LRRC45Q96CN5 670 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 CCDC77Q9BR77 488 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 TMEM106CQ9BVX2 250 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 ARHGAP20Q9P2F6 1191 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 NAGPAQ9UK23 515 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 TNFSF13BQ9Y275 285 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 FGFR4P22455 802 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 EIF4BP23588 611 aaKnown RBP12.36□□□□□ -0.43
VPS4A-201ENST00000254950 RWDD2BP57060 319 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 GRB14Q14449 540 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 CBWD6Q4V339 395 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 CBWD3Q5JTY5 395 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 CBWD5Q5RIA9 395 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 EPM2AIP1Q7L775 607 aaPredicted RBP12.36□□□□□ -0.43
VPS4A-201ENST00000254950 TAX1BP1Q86VP1 789 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 BSNDQ8WZ55 320 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 RNPEPQ9H4A4 650 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 KLK14Q9P0G3 267 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 ARHGAP28Q9P2N2 729 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 LCMT1Q9UIC8 334 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 LRRC37AA6NMS7 1700 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 DUSP11O75319 330 aaKnown RBP12.36□□□□□ -0.43
VPS4A-201ENST00000254950 PNPLA4P41247 253 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 TSPY1Q01534 308 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 PPP3CAQ08209 521 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 BRD3Q15059 726 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 ZNF792Q3KQV3 632 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 CFAP58Q5T655 872 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 MAGOHBQ96A72 148 aaKnown RBP12.36□□□□□ -0.43
VPS4A-201ENST00000254950 AIPL1Q9NZN9 384 aa12.36□□□□□ -0.43
VPS4A-201ENST00000254950 LRRIQ3A6PVS8 624 aaPredicted RBP12.35□□□□□ -0.43
VPS4A-201ENST00000254950 ARIH2O95376 493 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 ADRB2P07550 413 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 ARL2P36404 184 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 PSMC1P62191 440 aaKnown RBP12.35□□□□□ -0.43
VPS4A-201ENST00000254950 SV2CQ496J9 727 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 GLRA4Q5JXX5 417 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 REXO1L1PQ8IX06 675 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 APPL2Q8NEU8 664 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 NT5C1AQ9BXI3 368 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.35□□□□□ -0.43
VPS4A-201ENST00000254950 MYH4Q9Y623 1939 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 DDX60LQ5H9U9 1706 aaKnown RBP12.35□□□□□ -0.43
VPS4A-201ENST00000254950 PSMA2P25787 234 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 GJA5P36382 358 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 DAW1Q8N136 415 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 NME8Q8N427 588 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 BCAS3Q9H6U6 928 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 INTUQ9ULD6 942 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 OPA1O60313 960 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms