RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 N4BP1O75113 896 aaKnown RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 B3GAT3O94766 335 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 GBP2P32456 591 aaPredicted RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 UBA7P41226 1012 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 MATR3P43243 847 aaKnown RBP eCLIP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 YARSP54577 528 aaKnown RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 VCPP55072 806 aaKnown RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 CEBPZQ03701 1054 aaKnown RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 SOX4Q06945 474 aaPredicted RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 STRN3Q13033 797 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 SF3A1Q15459 793 aaKnown RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 ARSHQ5FYA8 562 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 SPECC1Q5M775 1068 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 FAM173BQ6P4H8 233 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 CCDC149Q6ZUS6 474 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 SUGP1Q8IWZ8 645 aaKnown RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 SYT2Q8N9I0 419 aaPredicted RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 RASSF8Q8NHQ8 419 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 RSAD2Q8WXG1 361 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 C18orf25Q96B23 403 aaPredicted RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 ACSF2Q96CM8 615 aaPredicted RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 ZMAT2Q96NC0 199 aaKnown RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 PPP1R10Q96QC0 940 aaKnown RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 CLSTN3Q9BQT9 956 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 CCDC94Q9BW85 323 aaPredicted RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 ZHX3Q9H4I2 956 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 PTPRHQ9HD43 1115 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 ARHGAP28Q9P2N2 729 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 SORCS3Q9UPU3 1222 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 RBM19Q9Y4C8 960 aaKnown RBP11.29□□□□□ -0.6
SCN1A-222ENST00000642141 PHLPP2Q6ZVD8 1323 aa11.29□□□□□ -0.6
SCN1A-222ENST00000642141 MEFVO15553 781 aaPredicted RBP11.28□□□□□ -0.6
SCN1A-222ENST00000642141 PLS3P13797 630 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 GUCY2CP25092 1073 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 GRM5P41594 1212 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 BRCC3P46736 316 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 NTHL1P78549 312 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 SPAG1Q07617 926 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 MTMR3Q13615 1198 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 MCM6Q14566 821 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 KARSQ15046 597 aaKnown RBP11.28□□□□□ -0.6
SCN1A-222ENST00000642141 PSMD5Q16401 504 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 TMEM119Q4V9L6 283 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 HYIQ5T013 277 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 ARL6IP4Q66PJ3 421 aaKnown RBP11.28□□□□□ -0.6
SCN1A-222ENST00000642141 LILRA6Q6PI73 481 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 OTOP3Q7RTS5 596 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 APBB1IPQ7Z5R6 666 aaPredicted RBP11.28□□□□□ -0.6
SCN1A-222ENST00000642141 GPBP1Q86WP2 473 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 ZDHHC14Q8IZN3 488 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 FBXL6Q8N531 539 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 TMEM161BQ8NDZ6 487 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 LNX1Q8TBB1 728 aaPredicted RBP11.28□□□□□ -0.6
SCN1A-222ENST00000642141 ZNF707Q96C28 371 aaPredicted RBP11.28□□□□□ -0.6
SCN1A-222ENST00000642141 NT5C3AQ9H0P0 336 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 TMEM134Q9H6X4 195 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.28□□□□□ -0.6
SCN1A-222ENST00000642141 FNIP2Q9P278 1114 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 POLIQ9UNA4 740 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 CLIC4Q9Y696 253 aa11.28□□□□□ -0.6
SCN1A-222ENST00000642141 PLXNA3P51805 1871 aa11.27□□□□□ -0.6
SCN1A-222ENST00000642141 TULP1O00294 542 aaPredicted RBP11.27□□□□□ -0.61
SCN1A-222ENST00000642141 ABLIM1O14639 778 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 CCL16O15467 120 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 KRT18P05783 430 aaKnown RBP11.27□□□□□ -0.61
SCN1A-222ENST00000642141 MAPTP10636 758 aaKnown RBP11.27□□□□□ -0.61
SCN1A-222ENST00000642141 PLCG1P19174 1290 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 TKTP29401 623 aaKnown RBP11.27□□□□□ -0.61
SCN1A-222ENST00000642141 MARCKSP29966 332 aaPredicted RBP11.27□□□□□ -0.61
SCN1A-222ENST00000642141 OR1D2P34982 312 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 SMTNP53814 917 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 ARPP19P56211 112 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 UPP1Q16831 310 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 ELMSAN1Q6PJG2 1045 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 DCLRE1AQ6PJP8 1040 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 MPZL3Q6UWV2 235 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 CD300LGQ6UXG3 332 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 ALKAL1Q6UXT8 129 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 RSPO2Q6UXX9 243 aaPredicted RBP11.27□□□□□ -0.61
SCN1A-222ENST00000642141 C15orf39Q6ZRI6 1047 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 USP49Q70CQ1 688 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 GET4Q7L5D6 327 aaPredicted RBP11.27□□□□□ -0.61
SCN1A-222ENST00000642141 BMP8AQ7Z5Y6 402 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 ALYREFQ86V81 257 aaKnown RBP11.27□□□□□ -0.61
SCN1A-222ENST00000642141 PLCD3Q8N3E9 789 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 MYCT1Q8N699 235 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 C3orf58Q8NDZ4 430 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 BICD1Q96G01 975 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 CALML4Q96GE6 196 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 ACAP3Q96P50 834 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 MYADMQ96S97 322 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 PHOX2BQ99453 314 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 REEP2Q9BRK0 252 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 NTPCRQ9BSD7 190 aaKnown RBP11.27□□□□□ -0.61
SCN1A-222ENST00000642141 KCNK12Q9HB15 430 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 WDR6Q9NNW5 1121 aaKnown RBP11.27□□□□□ -0.61
SCN1A-222ENST00000642141 TOPORSQ9NS56 1045 aaPredicted RBP11.27□□□□□ -0.61
SCN1A-222ENST00000642141 DPP7Q9UHL4 492 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 USTQ9Y2C2 406 aa11.27□□□□□ -0.61
SCN1A-222ENST00000642141 ARIH1Q9Y4X5 557 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms