RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 FOXI1Q12951 378 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 SEPT2Q15019 361 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 TAF7LQ5H9L4 462 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 AFMIDQ63HM1 303 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 KRT26Q7Z3Y9 468 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 ASB10Q8WXI3 467 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 LINC00476Q8WZB0 136 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 CRAMP1Q96RY5 1269 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 SLKQ9H2G2 1235 aaPredicted RBP5.85□□□□□ -1.47
CD44-239ENST00000639002 CYP4F11Q9HBI6 524 aa5.85□□□□□ -1.47
CD44-239ENST00000639002 RBM12Q9NTZ6 932 aaKnown RBP5.85□□□□□ -1.47
CD44-239ENST00000639002 COL11A2P13942 1736 aaPredicted RBP5.85□□□□□ -1.47
CD44-239ENST00000639002 GPR39O43194 453 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 PRSS23O95084 383 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 SPDEFO95238 335 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 CFIP05156 583 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 EGR2P11161 476 aaPredicted RBP5.84□□□□□ -1.47
CD44-239ENST00000639002 DDX6P26196 483 aaKnown RBP eCLIP5.84□□□□□ -1.47
CD44-239ENST00000639002 MTNR1BP49286 362 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 CLK3P49761 638 aaKnown RBP5.84□□□□□ -1.47
CD44-239ENST00000639002 RESTQ13127 1097 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 SP140Q13342 867 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 ANO4Q32M45 955 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 MUM1L1Q5H9M0 696 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 RHOT2Q8IXI1 618 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 PQLC1Q8N2U9 271 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 COG1Q8WTW3 980 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 PHACTR3Q96KR7 559 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 MRI1Q9BV20 369 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 ACE2Q9BYF1 805 aaPredicted RBP5.84□□□□□ -1.47
CD44-239ENST00000639002 PRDM13Q9H4Q3 707 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 LDAHQ9H6V9 325 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 ALG13Q9NP73 1137 aaKnown RBP5.84□□□□□ -1.47
CD44-239ENST00000639002 KLHL11Q9NVR0 708 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 SLC23A1Q9UHI7 598 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 TMA7Q9Y2S6 64 aaKnown RBP5.84□□□□□ -1.47
CD44-239ENST00000639002 FPGT-TNNI3KV9GXZ4 949 aa5.84□□□□□ -1.47
CD44-239ENST00000639002 SNRPA1P09661 255 aaKnown RBP5.83□□□□□ -1.48
CD44-239ENST00000639002 MTHFD2P13995 350 aa5.83□□□□□ -1.48
CD44-239ENST00000639002 FPR1P21462 350 aa5.83□□□□□ -1.48
CD44-239ENST00000639002 ECHS1P30084 290 aa5.83□□□□□ -1.48
CD44-239ENST00000639002 RAP2BP61225 183 aa5.83□□□□□ -1.48
CD44-239ENST00000639002 ERVK-21P61565 698 aa5.83□□□□□ -1.48
CD44-239ENST00000639002 GUCY1B3Q02153 619 aa5.83□□□□□ -1.48
CD44-239ENST00000639002 B3GNTL1Q67FW5 361 aaPredicted RBP5.83□□□□□ -1.48
CD44-239ENST00000639002 MED25Q71SY5 747 aa5.83□□□□□ -1.48
CD44-239ENST00000639002 CMTR2Q8IYT2 770 aaKnown RBP5.83□□□□□ -1.48
CD44-239ENST00000639002 OR56A1Q8NGH5 318 aa5.83□□□□□ -1.48
CD44-239ENST00000639002 OR2I1PQ8NGU4 316 aa5.83□□□□□ -1.48
CD44-239ENST00000639002 NTN5Q8WTR8 489 aaPredicted RBP5.83□□□□□ -1.48
CD44-239ENST00000639002 AHCYL2Q96HN2 611 aaKnown RBP5.83□□□□□ -1.48
CD44-239ENST00000639002 MYOCQ99972 504 aa5.83□□□□□ -1.48
CD44-239ENST00000639002 CCM2LQ9NUG4 571 aaPredicted RBP5.83□□□□□ -1.48
CD44-239ENST00000639002 NUDT3O95989 172 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 GSPT1P15170 499 aaKnown RBP5.82□□□□□ -1.48
CD44-239ENST00000639002 TYRP1P17643 537 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 PCSK1P29120 753 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 ALDH1A3P47895 512 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 SEC24CP53992 1094 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 MALLQ13021 153 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 NOMO1Q15155 1222 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 TSHZ3Q63HK5 1081 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 TMEM132CQ8N3T6 1108 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 COQ10AQ96MF6 247 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 DNAJC28Q9NX36 388 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 FAM30AQ9NZY2 134 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 PCDHGA2Q9Y5H1 932 aa5.82□□□□□ -1.48
CD44-239ENST00000639002 SALL3Q9BXA9 1300 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 SPATA31D3P0C874 917 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 OSMP13725 252 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 SLC6A2P23975 617 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 USP14P54578 494 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 FAPQ12884 760 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 UBXN2BQ14CS0 331 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 RRP12Q5JTH9 1297 aaKnown RBP5.81□□□□□ -1.48
CD44-239ENST00000639002 OTUD7BQ6GQQ9 843 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 DPY19L2P1Q6NXN4 242 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 SPATA31D4Q6ZUB0 917 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 PRIMA1Q86XR5 153 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 MAPKAPK5Q8IW41 473 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 LCORLQ8N3X6 602 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 WDR66Q8TBY9 1149 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 SLC2A13Q96QE2 648 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 UHRF1Q96T88 793 aaPredicted RBP5.81□□□□□ -1.48
CD44-239ENST00000639002 ZSWIM1Q9BR11 485 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 FBXO34Q9NWN3 711 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 ZNHIT2Q9UHR6 403 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 AJAP1Q9UKB5 411 aaPredicted RBP5.81□□□□□ -1.48
CD44-239ENST00000639002 ATP11BQ9Y2G3 1177 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 ACTL7AQ9Y615 435 aa5.81□□□□□ -1.48
CD44-239ENST00000639002 PHLDB1Q86UU1 1377 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 K7ESF4 209 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 KIAA0355O15063 1070 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 AMY1AP04745 511 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 RAP2AP10114 183 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 IL2RBP14784 551 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 MPLP40238 635 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 PER3P56645 1201 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 OCA2Q04671 838 aa5.8□□□□□ -1.48
CD44-239ENST00000639002 MGAT2Q10469 447 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms