RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 XYLBO75191 536 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 RECQL4O94761 1208 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 LIG1P18858 919 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 ATP2B1P20020 1258 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 FOSBP53539 338 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 MTSS1LQ765P7 747 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 NOSTRINQ8IVI9 506 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 DCLK2Q8N568 766 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 NECAB1Q8N987 351 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 ITFG1Q8TB96 612 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 SLC7A14Q8TBB6 771 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 RUBCNQ92622 972 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 MTMR9Q96QG7 549 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 MYH15Q9Y2K3 1946 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 OTOGLQ3ZCN5 2332 aa21.44■■□□□ 1.02
CLN3-262ENST00000637699 KANSL1LA0AUZ9 987 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 BTBD18B2RXH4 712 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 N4BP3O15049 544 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 SPATA31C1P0DKV0 1188 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 OR1D2P34982 312 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 ELAVL2Q12926 359 aaKnown RBP21.43■■□□□ 1.02
CLN3-262ENST00000637699 PRPF4BQ13523 1007 aaKnown RBP21.43■■□□□ 1.02
CLN3-262ENST00000637699 MLF2Q15773 248 aaPredicted RBP21.43■■□□□ 1.02
CLN3-262ENST00000637699 FAM187BQ17R55 369 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 SLC44A4Q53GD3 710 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 AXDND1Q5T1B0 1012 aaPredicted RBP21.43■■□□□ 1.02
CLN3-262ENST00000637699 CDCA2Q69YH5 1023 aaPredicted RBP21.43■■□□□ 1.02
CLN3-262ENST00000637699 DGLUCYQ7Z3D6 616 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 MAML2Q8IZL2 1156 aaPredicted RBP21.43■■□□□ 1.02
CLN3-262ENST00000637699 MCPH1Q8NEM0 835 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 KXD1Q9BQD3 176 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 SPATA6Q9NWH7 488 aaPredicted RBP21.43■■□□□ 1.02
CLN3-262ENST00000637699 HCFC1R1Q9NWW0 138 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 COL4A3Q01955 1670 aa21.43■■□□□ 1.02
CLN3-262ENST00000637699 HOXA9P31269 272 aa21.42■■□□□ 1.02
CLN3-262ENST00000637699 UBXN2BQ14CS0 331 aa21.42■■□□□ 1.02
CLN3-262ENST00000637699 NAB2Q15742 525 aa21.42■■□□□ 1.02
CLN3-262ENST00000637699 PDXDC1Q6P996 788 aa21.42■■□□□ 1.02
CLN3-262ENST00000637699 CATSPER3Q86XQ3 398 aa21.42■■□□□ 1.02
CLN3-262ENST00000637699 BCO2Q9BYV7 579 aa21.42■■□□□ 1.02
CLN3-262ENST00000637699 C2orf40Q9H1Z8 148 aa21.42■■□□□ 1.02
CLN3-262ENST00000637699 GDAQ9Y2T3 454 aa21.42■■□□□ 1.02
CLN3-262ENST00000637699 MTF2Q9Y483 593 aaPredicted RBP21.42■■□□□ 1.02
CLN3-262ENST00000637699 DNAH14Q0VDD8 3507 aa21.42■■□□□ 1.02
CLN3-262ENST00000637699 MED19A0JLT2 244 aaPredicted RBP21.41■■□□□ 1.02
CLN3-262ENST00000637699 FAM170BA6NMN3 283 aa21.41■■□□□ 1.02
CLN3-262ENST00000637699 PRKCBP05771 671 aa21.41■■□□□ 1.02
CLN3-262ENST00000637699 CD72P21854 359 aa21.41■■□□□ 1.02
CLN3-262ENST00000637699 IGFBP6P24592 240 aaPredicted RBP21.41■■□□□ 1.02
CLN3-262ENST00000637699 RAB33AQ14088 237 aa21.41■■□□□ 1.02
CLN3-262ENST00000637699 MAPK6Q16659 721 aa21.41■■□□□ 1.02
CLN3-262ENST00000637699 DIS3L2Q8IYB7 885 aaKnown RBP21.41■■□□□ 1.02
CLN3-262ENST00000637699 ING5Q8WYH8 240 aa21.41■■□□□ 1.02
CLN3-262ENST00000637699 BSNDQ8WZ55 320 aa21.41■■□□□ 1.02
CLN3-262ENST00000637699 ADPGKQ9BRR6 497 aa21.41■■□□□ 1.02
CLN3-262ENST00000637699 DDX23Q9BUQ8 820 aaKnown RBP21.41■■□□□ 1.02
CLN3-262ENST00000637699 TMEM60Q9H2L4 133 aa21.41■■□□□ 1.02
CLN3-262ENST00000637699 FANCMQ8IYD8 2048 aa21.41■■□□□ 1.02
CLN3-262ENST00000637699 MIA3Q5JRA6 1907 aa21.41■■□□□ 1.02
CLN3-262ENST00000637699 LAMTOR5O43504 91 aa21.4■■□□□ 1.02
CLN3-262ENST00000637699 KINO60870 393 aaKnown RBP21.4■■□□□ 1.02
CLN3-262ENST00000637699 MED24O75448 989 aa21.4■■□□□ 1.02
CLN3-262ENST00000637699 PRKCQQ04759 706 aa21.4■■□□□ 1.02
CLN3-262ENST00000637699 ANKRD1Q15327 319 aa21.4■■□□□ 1.02
CLN3-262ENST00000637699 UVSSAQ2YD98 709 aa21.4■■□□□ 1.02
CLN3-262ENST00000637699 PABPC1LQ4VXU2 614 aaKnown RBP21.4■■□□□ 1.02
CLN3-262ENST00000637699 EEF1DP3Q658K8 133 aa21.4■■□□□ 1.02
CLN3-262ENST00000637699 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.4■■□□□ 1.02
CLN3-262ENST00000637699 NACC1Q96RE7 527 aa21.4■■□□□ 1.02
CLN3-262ENST00000637699 TUFT1Q9NNX1 390 aa21.4■■□□□ 1.02
CLN3-262ENST00000637699 DNMT3BQ9UBC3 853 aaKnown RBP21.4■■□□□ 1.02
CLN3-262ENST00000637699 CEP250Q9BV73 2442 aa21.4■■□□□ 1.02
CLN3-262ENST00000637699 VWA8A3KMH1 1905 aa21.39■■□□□ 1.02
CLN3-262ENST00000637699 GPR179Q6PRD1 2367 aa21.39■■□□□ 1.02
CLN3-262ENST00000637699 ACKR2O00590 384 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 B3GAT3O94766 335 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 EDN1P05305 212 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 FGFR3P22607 806 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 MCM7P33993 719 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 PFKPQ01813 784 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 PUM1Q14671 1186 aaKnown RBP eCLIP21.39■■□□□ 1.01
CLN3-262ENST00000637699 GLRA4Q5JXX5 417 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 PADI6Q6TGC4 694 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 RSPO2Q6UXX9 243 aaPredicted RBP21.39■■□□□ 1.01
CLN3-262ENST00000637699 NPAS3Q8IXF0 933 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 SUMF1Q8NBK3 374 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 DEPTORQ8TB45 409 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 CDY1Q9Y6F8 540 aa21.39■■□□□ 1.01
CLN3-262ENST00000637699 LARGE1O95461 756 aa21.38■■□□□ 1.01
CLN3-262ENST00000637699 CSTF1Q05048 431 aaKnown RBP21.38■■□□□ 1.01
CLN3-262ENST00000637699 TRIM29Q14134 588 aa21.38■■□□□ 1.01
CLN3-262ENST00000637699 ME3Q16798 604 aa21.38■■□□□ 1.01
CLN3-262ENST00000637699 MCRS1Q96EZ8 462 aa21.38■■□□□ 1.01
CLN3-262ENST00000637699 CCDC113Q9H0I3 377 aa21.38■■□□□ 1.01
CLN3-262ENST00000637699 POLD4Q9HCU8 107 aa21.38■■□□□ 1.01
CLN3-262ENST00000637699 LTB4R2Q9NPC1 389 aa21.38■■□□□ 1.01
CLN3-262ENST00000637699 MTRRQ9UBK8 725 aa21.38■■□□□ 1.01
CLN3-262ENST00000637699 FBXO4Q9UKT5 387 aa21.38■■□□□ 1.01
CLN3-262ENST00000637699 KCNH3Q9ULD8 1083 aa21.38■■□□□ 1.01
CLN3-262ENST00000637699 MRPS23Q9Y3D9 190 aaKnown RBP21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms