RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 GDAQ9Y2T3 454 aa7.27□□□□□ -1.25
SCN1A-213ENST00000636759 NOC2LQ9Y3T9 749 aaKnown RBP7.27□□□□□ -1.25
SCN1A-213ENST00000636759 PITPNM2Q9BZ72 1349 aa7.27□□□□□ -1.25
SCN1A-213ENST00000636759 TNRC6CQ9HCJ0 1690 aaKnown RBP7.27□□□□□ -1.25
SCN1A-213ENST00000636759 GSG1L2A8MUP6 293 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 RASA4BC9J798 803 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 ADAMTS3O15072 1205 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 RASA4O43374 803 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CYTH3O43739 400 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 TBCAO75347 108 aaKnown RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 ZBED1O96006 694 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 S100BP04271 92 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 RXRGP48443 463 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 EMP3P54852 163 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 TUBA1BP68363 451 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 TUBA4AP68366 448 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 PLCB3Q01970 1234 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 MGAT5Q09328 741 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 NDUFA5Q16718 116 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 PARP10Q53GL7 1025 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 TUBA1AQ71U36 451 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 KBTBD2Q8IY47 623 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CCDC82Q8N4S0 544 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 SCFD2Q8WU76 684 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 MAGEB18Q96M61 343 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CEP295NLQ96MC4 621 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 SETDB2Q96T68 719 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CCDC68Q9H2F9 335 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 NLRC4Q9NPP4 1024 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 STK32BQ9NY57 414 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 SMIM22K7EJ46 135 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 TOM1O60784 492 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 RNASEH1O60930 286 aaKnown RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 TRMUO75648 421 aaKnown RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 BMP15O95972 392 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 GAS8O95995 478 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 RPN1P04843 607 aaKnown RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 OCM2P0CE71 109 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 OCMP0CE72 109 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 COL6A2P12110 1019 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 BRAFP15056 766 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 IFNAR1P17181 557 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 MAP3K10Q02779 954 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 MAP3K21Q5TCX8 1036 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 KLHDC10Q6PID8 442 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 TTC39CQ8N584 583 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 ACTRT1Q8TDG2 376 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 STARD8Q92502 1023 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 ESR2Q92731 530 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 RUNDC3BQ96NL0 473 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 DUSP9Q99956 384 aaKnown RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 TRIM51Q9BSJ1 452 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 PLVAPQ9BX97 442 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CELF4Q9BZC1 486 aaKnown RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CEP44Q9C0F1 390 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 GBA3Q9H227 469 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 ZSWIM5Q9P217 1185 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CNOT7Q9UIV1 285 aaKnown RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 TMEM59LQ9UK28 342 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 TTC7AQ9ULT0 858 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CHKBQ9Y259 395 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 COQ6Q9Y2Z9 468 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CNTNAP4Q9C0A0 1308 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 A0A1W2PRG0 241 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CES2O00748 559 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 MCF2LO15068 1137 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 ZBTB43O43298 467 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 FGRP09769 529 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 PDE6AP16499 860 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 ZBTB16Q05516 673 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 MSLNQ13421 630 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 PPP2R5EQ16537 467 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 MMEL1Q495T6 779 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CCSAPQ6IQ19 270 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CCDC62Q6P9F0 684 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 LDHAL6AQ6ZMR3 332 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CCDC84Q86UT8 332 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-213ENST00000636759 VPS36Q86VN1 386 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 SFR1Q86XK3 245 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 EEF2KMTQ96G04 330 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 SPZ1Q9BXG8 430 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 CABP5Q9NP86 173 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 DMTF1Q9Y222 760 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 TIMM22Q9Y584 194 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 WASF2Q9Y6W5 498 aa7.26□□□□□ -1.25
SCN1A-213ENST00000636759 MYH10P35580 1976 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 PNPLA7Q6ZV29 1317 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 A8MXQ7 604 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 TRAFD1O14545 582 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 KCNQ2O43526 872 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 XPOTO43592 962 aaKnown RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 GTF2H1P32780 548 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 NAB2Q15742 525 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 TAF1BQ53T94 588 aaPredicted RBP7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CLEC4GQ6UXB4 293 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 CCDC25Q86WR0 208 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 IRF2BP1Q8IU81 584 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 SLC7A5P1Q8MH63 180 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 LINC00116Q8NCU8 138 aa7.25□□□□□ -1.25
SCN1A-213ENST00000636759 LSM14AQ8ND56 463 aaKnown RBP7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms