RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 GTF2H1P32780 548 aa15.33■□□□□ 0.04
CLN3-242ENST00000635958 DLG4P78352 724 aa15.33■□□□□ 0.04
CLN3-242ENST00000635958 BFSP2Q13515 415 aa15.33■□□□□ 0.04
CLN3-242ENST00000635958 LPIN1Q14693 890 aa15.33■□□□□ 0.04
CLN3-242ENST00000635958 DCAF17Q5H9S7 520 aaPredicted RBP15.33■□□□□ 0.04
CLN3-242ENST00000635958 TCERG1LQ5VWI1 586 aa15.33■□□□□ 0.04
CLN3-242ENST00000635958 AGO3Q9H9G7 860 aaKnown RBP15.33■□□□□ 0.04
CLN3-242ENST00000635958 ERVK-5Q9HDB9 667 aa15.33■□□□□ 0.04
CLN3-242ENST00000635958 RBAKQ9NYW8 714 aaPredicted RBP15.33■□□□□ 0.04
CLN3-242ENST00000635958 PITPNM1O00562 1244 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 P4HA2O15460 535 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 ARHGAP6O43182 974 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 STX10O60499 249 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 TNFSF9P41273 254 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 FMO5P49326 533 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 TUBB4BP68371 445 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 TBX2Q13207 712 aaPredicted RBP15.32■□□□□ 0.04
CLN3-242ENST00000635958 SURF1Q15526 300 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 UBXN11Q5T124 520 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 FAM43BQ6ZT52 329 aaPredicted RBP15.32■□□□□ 0.04
CLN3-242ENST00000635958 THNSL1Q8IYQ7 743 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 PAWRQ96IZ0 340 aaKnown RBP15.32■□□□□ 0.04
CLN3-242ENST00000635958 OSBPL7Q9BZF2 842 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 C11orf49Q9H6J7 331 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 PADI3Q9ULW8 664 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 PIN4Q9Y237 131 aaKnown RBP15.32■□□□□ 0.04
CLN3-242ENST00000635958 SIK3Q9Y2K2 1263 aa15.32■□□□□ 0.04
CLN3-242ENST00000635958 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.32■□□□□ 0.04
CLN3-242ENST00000635958 LRRIQ3A6PVS8 624 aaPredicted RBP15.31■□□□□ 0.04
CLN3-242ENST00000635958 DCDC2CA8MYV0 355 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 TRIM49P0CI25 452 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 TRIM49CP0CI26 452 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 STAG3L1P0CL83 205 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 HARSP12081 509 aaKnown RBP15.31■□□□□ 0.04
CLN3-242ENST00000635958 SELPP16109 830 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 GRM5P41594 1212 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 ATN1P54259 1190 aaPredicted RBP15.31■□□□□ 0.04
CLN3-242ENST00000635958 TLE2Q04725 743 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 PPP3CAQ08209 521 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 KCNMA1Q12791 1236 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 ENOX2Q16206 610 aaKnown RBP15.31■□□□□ 0.04
CLN3-242ENST00000635958 SEZ6Q53EL9 994 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 CEP120Q8N960 986 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 TRAIPQ9BWF2 469 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 PQBP1O60828 265 aaKnown RBP15.31■□□□□ 0.04
CLN3-242ENST00000635958 N4BP1O75113 896 aaKnown RBP15.31■□□□□ 0.04
CLN3-242ENST00000635958 H2AFXP16104 143 aaPredicted RBP15.31■□□□□ 0.04
CLN3-242ENST00000635958 RGS19P49795 217 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 FAAP100Q0VG06 881 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 MBTPS1Q14703 1052 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 PTPN21Q16825 1174 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 FIGNQ5HY92 759 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 NECAB2Q7Z6G3 386 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 CCDC127Q96BQ5 260 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 PDE11AQ9HCR9 933 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 COQ4Q9Y3A0 265 aa15.31■□□□□ 0.04
CLN3-242ENST00000635958 IL18RAPO95256 599 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 NPTXRO95502 500 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 GHRP10912 638 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 CD52P31358 61 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 WNT7BP56706 349 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 NFX1Q12986 1120 aaKnown RBP15.3■□□□□ 0.04
CLN3-242ENST00000635958 DSC3Q14574 896 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 TRIM60Q495X7 471 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 CBWD6Q4V339 395 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 CBWD3Q5JTY5 395 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 CBWD5Q5RIA9 395 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 DPY19L2P1Q6NXN4 242 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 C15orf39Q6ZRI6 1047 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 LRRC8DQ7L1W4 858 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 TMEM192Q8IY95 271 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 IQCDQ96DY2 449 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 FNBP1Q96RU3 617 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 POP1Q99575 1024 aaKnown RBP15.3■□□□□ 0.04
CLN3-242ENST00000635958 NUP58Q9BVL2 599 aa15.3■□□□□ 0.04
CLN3-242ENST00000635958 EIF2AQ9BY44 585 aaKnown RBP15.3■□□□□ 0.04
CLN3-242ENST00000635958 RPF1Q9H9Y2 349 aaKnown RBP15.3■□□□□ 0.04
CLN3-242ENST00000635958 MEFVO15553 781 aaPredicted RBP15.29■□□□□ 0.04
CLN3-242ENST00000635958 AP3M2P53677 418 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 PAK2Q13177 524 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 TUBB2AQ13885 445 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 EXOC3L4Q17RC7 722 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 SLC10A6Q3KNW5 377 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 GBP6Q6ZN66 633 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 UBE2Q1Q7Z7E8 422 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 ZNF516Q92618 1163 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 ACAP3Q96P50 834 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 CGRRF1Q99675 332 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 TUBB2BQ9BVA1 445 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 TMEM117Q9H0C3 514 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 ASB7Q9H672 318 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 PLEKHA5Q9HAU0 1116 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 TMEM8AQ9HCN3 771 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 DNAI1Q9UI46 699 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 TTC26A0AVF1 554 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 EFCAB8A8MWE9 144 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 C4BPAP04003 597 aaKnown RBP15.29■□□□□ 0.04
CLN3-242ENST00000635958 DLATP10515 647 aaKnown RBP15.29■□□□□ 0.04
CLN3-242ENST00000635958 PON1P27169 355 aa15.29■□□□□ 0.04
CLN3-242ENST00000635958 GCLMP48507 274 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms