RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 AZI2Q9H6S1 392 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.68□□□□□ -0.223e-6■■■■■ 117.2
LINC00540-203ENST00000631321 ZNF277Q9NRM2 450 aaPredicted RBP13.68□□□□□ -0.22
LINC00540-203ENST00000631321 HOMER2Q9NSB8 354 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 WHRNQ9P202 907 aa13.68□□□□□ -0.22
LINC00540-203ENST00000631321 ECEL1O95672 775 aa13.67□□□□□ -0.22
LINC00540-203ENST00000631321 MYCLP12524 364 aaPredicted RBP13.67□□□□□ -0.22
LINC00540-203ENST00000631321 GARTP22102 1010 aa13.67□□□□□ -0.22
LINC00540-203ENST00000631321 GKAP1Q5VSY0 366 aaPredicted RBP13.67□□□□□ -0.22
LINC00540-203ENST00000631321 C15orf39Q6ZRI6 1047 aa13.67□□□□□ -0.22
LINC00540-203ENST00000631321 TRMT10CQ7L0Y3 403 aaKnown RBP13.67□□□□□ -0.22
LINC00540-203ENST00000631321 OSBPL7Q9BZF2 842 aa13.67□□□□□ -0.22
LINC00540-203ENST00000631321 ROPN1BQ9BZX4 212 aaPredicted RBP13.67□□□□□ -0.22
LINC00540-203ENST00000631321 STMN4Q9H169 189 aaPredicted RBP13.67□□□□□ -0.22
LINC00540-203ENST00000631321 ROPN1Q9HAT0 212 aaPredicted RBP13.67□□□□□ -0.22
LINC00540-203ENST00000631321 PDLIM7Q9NR12 457 aa13.67□□□□□ -0.22
LINC00540-203ENST00000631321 WNT10BO00744 389 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 TP73O15350 636 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 UNGP13051 313 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-203ENST00000631321 CHN1P15882 459 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 UBAP2Q5T6F2 1119 aaKnown RBP13.66□□□□□ -0.22
LINC00540-203ENST00000631321 SYDE1Q6ZW31 735 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-203ENST00000631321 OTUD6AQ7L8S5 288 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 CCDC13Q8IYE1 715 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 DHX38Q92620 1227 aaKnown RBP13.66□□□□□ -0.22
LINC00540-203ENST00000631321 GPRASP2Q96D09 838 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 CABS1Q96KC9 395 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 TCEAL9Q9UHQ7 104 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 ZNRF3Q9ULT6 936 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 PCDHA10Q9Y5I2 948 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 VGLL3A8MV65 326 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 CLDN3O15551 220 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 CTNND1O60716 968 aaKnown RBP13.66□□□□□ -0.22
LINC00540-203ENST00000631321 FDX1P10109 184 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 MYBL1P10243 752 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 KCNJ1P48048 391 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 CLDN10P78369 228 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 IFI35P80217 286 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-203ENST00000631321 TBC1D10BQ4KMP7 808 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-203ENST00000631321 BRDTQ58F21 947 aaPredicted RBP13.66□□□□□ -0.22
LINC00540-203ENST00000631321 RHBDF2Q6PJF5 856 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 TAX1BP1Q86VP1 789 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 VSIG10LQ86VR7 867 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 ZNF677Q86XU0 584 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 GPD1LQ8N335 351 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 MAIP1Q8WWC4 291 aa13.66□□□□□ -0.22
LINC00540-203ENST00000631321 H0YHG0 523 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 MAFGO15525 162 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 ZNF862O60290 1169 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 ZBED4O75132 1171 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 SLC1A1P43005 524 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 PPARDQ03181 441 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 AUHQ13825 339 aaKnown RBP13.65□□□□□ -0.22
LINC00540-203ENST00000631321 NBPF9Q3BBW0 867 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 ANKRD20A8PQ5CZ79 823 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 ARHGEF16Q5VV41 709 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 NSMFQ6X4W1 530 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 CPLX4Q7Z7G2 160 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 MCOLN2Q8IZK6 566 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 POMGNT1Q8WZA1 660 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 TRIM11Q96F44 468 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 TEPSINQ96N21 525 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 CEP89Q96ST8 783 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 PTPN22Q9Y2R2 807 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 RGPD3A6NKT7 1758 aaPredicted RBP13.65□□□□□ -0.22
LINC00540-203ENST00000631321 RGPD4Q7Z3J3 1758 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 MYPNQ86TC9 1320 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 ADGRA3Q8IWK6 1321 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 TLDC2A0PJX2 215 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 RASGRF2O14827 1237 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 ASAP2O43150 1006 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 DKC1O60832 514 aaKnown RBP eCLIP13.65□□□□□ -0.22
LINC00540-203ENST00000631321 RASSF9O75901 435 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 GHRP10912 638 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 FGFR4P22455 802 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 MAPK4P31152 587 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 MAN1A1P33908 653 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 PTP4A2Q12974 167 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 CALCOCO2Q13137 446 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 SGO2Q562F6 1265 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 SWT1Q5T5J6 900 aaKnown RBP13.65□□□□□ -0.22
LINC00540-203ENST00000631321 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.65□□□□□ -0.22
LINC00540-203ENST00000631321 NLRX1Q86UT6 975 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 KCNN1Q92952 543 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 ATP6V0A1Q93050 837 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 CEP170P1Q96L14 293 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 AAASQ9NRG9 546 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 ANAPC7Q9UJX3 599 aa13.65□□□□□ -0.22
LINC00540-203ENST00000631321 TESPA1A2RU30 521 aaPredicted RBP13.64□□□□□ -0.23
LINC00540-203ENST00000631321 ITIH2P19823 946 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 IVDP26440 423 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 CCND2P30279 289 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 ABCD1P33897 745 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 PTK6Q13882 451 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 TAS1R3Q7RTX0 852 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 MCPH1Q8NEM0 835 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 EPS8L3Q8TE67 593 aaKnown RBP13.64□□□□□ -0.23
LINC00540-203ENST00000631321 CCT6BQ92526 530 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 SELENOSQ9BQE4 189 aa13.64□□□□□ -0.23
LINC00540-203ENST00000631321 KDM4CQ9H3R0 1056 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms