RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 KATNBL1Q9H079 304 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 THAP2Q9H0W7 228 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.74■■□□□ 1.39
PNKP-220ENST00000627232 AMFRQ9UKV5 643 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 PACSIN2Q9UNF0 486 aaPredicted RBP23.74■■□□□ 1.39
PNKP-220ENST00000627232 FTLP02792 175 aaPredicted RBP23.74■■□□□ 1.39
PNKP-220ENST00000627232 LGALS2P05162 132 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 FMO1Q01740 532 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 GRB14Q14449 540 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 SURF1Q15526 300 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 FAM110CQ1W6H9 321 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 TMEM63BQ5T3F8 832 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 SLC47A2Q86VL8 602 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 PPTC7Q8NI37 304 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 ARHGEF26Q96DR7 871 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 MS4A14Q96JA4 679 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 UTP3Q9NQZ2 479 aaKnown RBP eCLIP23.74■■□□□ 1.392e-7■■■■■ 93.2
PNKP-220ENST00000627232 L1RE1Q9UN81 338 aa23.74■■□□□ 1.39
PNKP-220ENST00000627232 COL1A2P08123 1366 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 KCNK3O14649 394 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 MAP2K7O14733 419 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 OGTO15294 1046 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 BPIFB4P59827 614 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 GPC5P78333 572 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 POU5F1BQ06416 359 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 MCL1Q07820 350 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 MKRN3Q13064 507 aaKnown RBP23.73■■□□□ 1.39
PNKP-220ENST00000627232 BIRC3Q13489 604 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 ZBTB41Q5SVQ8 909 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 EFCAB12Q6NXP0 572 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 HDXQ7Z353 690 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 GPR142Q7Z601 462 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 ACTRT1Q8TDG2 376 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 HES6Q96HZ4 224 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 PI4K2AQ9BTU6 479 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 NFKBIZQ9BYH8 718 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 OSGEPQ9NPF4 335 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 EHD2Q9NZN4 543 aa23.73■■□□□ 1.39
PNKP-220ENST00000627232 ACKR2O00590 384 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 ABLIM1O14639 778 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 FAM189A1O60320 539 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 BUB1BO60566 1050 aaPredicted RBP23.72■■□□□ 1.39
PNKP-220ENST00000627232 MTA2O94776 668 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 CELF2O95319 508 aaKnown RBP23.72■■□□□ 1.39
PNKP-220ENST00000627232 VNN1O95497 513 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 C22orf31O95567 290 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 PTENP60484 403 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 LMBRD2Q68DH5 695 aaPredicted RBP23.72■■□□□ 1.39
PNKP-220ENST00000627232 SMYD5Q6GMV2 418 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 ZNF677Q86XU0 584 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 RHPN2Q8IUC4 686 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 DDX1Q92499 740 aaKnown RBP23.72■■□□□ 1.39
PNKP-220ENST00000627232 FZD8Q9H461 694 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 RNF216Q9NWF9 866 aaPredicted RBP23.72■■□□□ 1.39
PNKP-220ENST00000627232 SMARCAL1Q9NZC9 954 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 PTPRJQ12913 1337 aa23.72■■□□□ 1.39
PNKP-220ENST00000627232 MAGEB2O15479 319 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 SASH3O75995 380 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 SNAI1O95863 264 aaPredicted RBP23.71■■□□□ 1.39
PNKP-220ENST00000627232 MMEP08473 750 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 PROZP22891 400 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 MAPK4P31152 587 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 PLA2G4AP47712 749 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 TAF3Q5VWG9 929 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 TSHZ1Q6ZSZ6 1077 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 PLEKHH3Q7Z736 793 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 WDR49Q8IV35 697 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 USP38Q8NB14 1042 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 TRAPPC12Q8WVT3 735 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 RNPEPQ9H4A4 650 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 GOLPH3Q9H4A6 298 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 RBM12Q9NTZ6 932 aaKnown RBP23.71■■□□□ 1.39
PNKP-220ENST00000627232 EVPLQ92817 2033 aa23.71■■□□□ 1.39
PNKP-220ENST00000627232 TTLL13PA6NNM8 815 aa23.7■■□□□ 1.38
PNKP-220ENST00000627232 KRT5P13647 590 aa23.7■■□□□ 1.38
PNKP-220ENST00000627232 TBXAS1P24557 533 aaPredicted RBP23.7■■□□□ 1.38
PNKP-220ENST00000627232 DNA2P51530 1060 aa23.7■■□□□ 1.38
PNKP-220ENST00000627232 C11orf63Q6NUN7 778 aa23.7■■□□□ 1.38
PNKP-220ENST00000627232 DPP9Q86TI2 863 aa23.7■■□□□ 1.38
PNKP-220ENST00000627232 RASGEF1CQ8N431 466 aa23.7■■□□□ 1.38
PNKP-220ENST00000627232 METTL13Q8N6R0 699 aa23.7■■□□□ 1.38
PNKP-220ENST00000627232 TCHPQ9BT92 498 aa23.7■■□□□ 1.38
PNKP-220ENST00000627232 LRRC1Q9BTT6 524 aa23.7■■□□□ 1.38
PNKP-220ENST00000627232 TMEM59LQ9UK28 342 aa23.7■■□□□ 1.38
PNKP-220ENST00000627232 PPFIA4O75335 1185 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 INSRRP14616 1297 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 C8orf74Q6P047 294 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 MPZL3Q6UWV2 235 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 CCNI2Q6ZMN8 369 aaPredicted RBP23.69■■□□□ 1.38
PNKP-220ENST00000627232 IFNLR1Q8IU57 520 aaPredicted RBP23.69■■□□□ 1.38
PNKP-220ENST00000627232 LINC01465Q8N7H1 131 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 MAML3Q96JK9 1138 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 RRAGCQ9HB90 399 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 PTPRHQ9HD43 1115 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 CTTNBP2NLQ9P2B4 639 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 CPSF3Q9UKF6 684 aaKnown RBP23.69■■□□□ 1.38
PNKP-220ENST00000627232 PCDHB2Q9Y5E7 798 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 SLC15A5A6NIM6 579 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 CYP1A2P05177 515 aa23.69■■□□□ 1.38
PNKP-220ENST00000627232 HARSP12081 509 aaKnown RBP23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms