RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 VIMP08670 466 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 GZMAP12544 262 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 KRT17Q04695 432 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 PRKG1Q13976 671 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 GKAP1Q5VSY0 366 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 SNRNP48Q6IEG0 339 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 TMEM143Q96AN5 459 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 FNBP1Q96RU3 617 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 MOV10L1Q9BXT6 1211 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 KLHL11Q9NVR0 708 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 GGT7Q9UJ14 662 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 PCDHA3Q9Y5H8 950 aa13.84□□□□□ -0.19
CCDC88A-214ENST00000621814 PASKQ96RG2 1323 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 O00370 1275 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 CFHP08603 1231 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 MAPTP10636 758 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 JAK3P52333 1124 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 ACAD10Q6JQN1 1059 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 FAM83AQ86UY5 434 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 TXLNGYQ9BZA5 131 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 STK32BQ9NY57 414 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 ANKFY1Q9P2R3 1169 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 TBK1Q9UHD2 729 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 RASGRF2O14827 1237 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 HGSO14964 777 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 LIG4P49917 911 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 GTF2A1P52655 376 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 KRT76Q01546 638 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 CYP24A1Q07973 514 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 MAP4K3Q8IVH8 894 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 DYDC1Q8WWB3 177 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 XPO6Q96QU8 1125 aaKnown RBP13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 MTFR1LQ9H019 292 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 C1orf112Q9NSG2 853 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 GTF3C4Q9UKN8 822 aa13.83□□□□□ -0.2
CCDC88A-214ENST00000621814 PEX10O60683 326 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 WNT7BP56706 349 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 BYSLQ13895 437 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 C12orf56Q8IXR9 622 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 CCDC13Q8IYE1 715 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 GPD1LQ8N335 351 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 PLCD3Q8N3E9 789 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 CD101Q93033 1021 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 CHMP6Q96FZ7 201 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 ZBTB45Q96K62 511 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 C11orf70Q9BRQ4 267 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 INTS9Q9NV88 658 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 PCYOX1Q9UHG3 505 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 GJA3Q9Y6H8 435 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 VWA5AO00534 786 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 RIPK2O43353 540 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 CYP1A2P05177 515 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 ADCY8P40145 1251 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 MMS22LQ6ZRQ5 1243 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 SPATS2Q86XZ4 545 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 ANKRD42Q8N9B4 389 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 ZNF516Q92618 1163 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 FAM212AQ96EL1 285 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 POLR3FQ9H1D9 316 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 KCNK9Q9NPC2 374 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 CTNNAL1Q9UBT7 734 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 CD2APQ9Y5K6 639 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 LRRIQ4A6NIV6 560 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 HSPA6P17066 643 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 SFNP31947 248 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 CHKAP35790 457 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 GPC3P51654 580 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 HMGCS2P54868 508 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 CLUL1Q15846 466 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 WDR44Q5JSH3 913 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 NBPF12Q5TAG4 269 aaPredicted RBP13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 KAZNQ674X7 775 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 NIPA1Q7RTP0 329 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 LPAR1Q92633 364 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 ELAC2Q9BQ52 826 aaKnown RBP13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 HERPUD2Q9BSE4 406 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 OSBPL7Q9BZF2 842 aa13.82□□□□□ -0.2
CCDC88A-214ENST00000621814 CPP00450 1065 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 CREB1P16220 341 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 PIK3CAP42336 1068 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 NSFP46459 744 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 HADHBP55084 474 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 HP1BP3Q5SSJ5 553 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 ICE2Q659A1 982 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 KCNV1Q6PIU1 500 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 TMEM270Q6UE05 265 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 CCDC60Q8IWA6 550 aaPredicted RBP13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 JDP2Q8WYK2 163 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 DDX1Q92499 740 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 TLCD1Q96CP7 247 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 IFT74Q96LB3 600 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 PARP2Q9UGN5 583 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 DNM1LO00429 736 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 GRIN3BO60391 1043 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 LYPLA2O95372 231 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 CD58P19256 250 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 NLRP11P59045 1033 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 PRKCEQ02156 737 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 KYNUQ16719 465 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 CLEC16AQ2KHT3 1053 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms