RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 ADGRA2Q96PE1 1338 aa22.89■■□□□ 1.25
LIME1-210ENST00000621325 ESYT3A0FGR9 886 aa22.89■■□□□ 1.25
LIME1-210ENST00000621325 RTN2O75298 545 aa22.89■■□□□ 1.25
LIME1-210ENST00000621325 LGR5O75473 907 aa22.89■■□□□ 1.25
LIME1-210ENST00000621325 HLA-DRAP01903 254 aa22.89■■□□□ 1.25
LIME1-210ENST00000621325 SRGAP2CP0DJJ0 459 aa22.89■■□□□ 1.25
LIME1-210ENST00000621325 KRT5P13647 590 aa22.89■■□□□ 1.25
LIME1-210ENST00000621325 COPB2P35606 906 aa22.89■■□□□ 1.25
LIME1-210ENST00000621325 MKRN3Q13064 507 aaKnown RBP22.89■■□□□ 1.25
LIME1-210ENST00000621325 SLFN12LQ6IEE8 588 aa22.89■■□□□ 1.25
LIME1-210ENST00000621325 ZNF668Q96K58 619 aaPredicted RBP22.89■■□□□ 1.25
LIME1-210ENST00000621325 TMEM134Q9H6X4 195 aa22.89■■□□□ 1.25
LIME1-210ENST00000621325 CTTNBP2NLQ9P2B4 639 aa22.89■■□□□ 1.25
LIME1-210ENST00000621325 NOC2LQ9Y3T9 749 aaKnown RBP22.89■■□□□ 1.25
LIME1-210ENST00000621325 TRIM66O15016 1216 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 VNN1O95497 513 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 TXNP10599 105 aaKnown RBP22.88■■□□□ 1.25
LIME1-210ENST00000621325 ENPEPQ07075 957 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 PLCB4Q15147 1175 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 DDX1Q92499 740 aaKnown RBP22.88■■□□□ 1.25
LIME1-210ENST00000621325 FAM167AQ96KS9 214 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 SIP14410 1827 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 DDX3YO15523 660 aaKnown RBP22.88■■□□□ 1.25
LIME1-210ENST00000621325 GJB1P08034 283 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 BIRC3Q13489 604 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 GLE1Q53GS7 698 aaKnown RBP22.88■■□□□ 1.25
LIME1-210ENST00000621325 GJC2Q5T442 439 aaPredicted RBP22.88■■□□□ 1.25
LIME1-210ENST00000621325 DCAF12L1Q5VU92 463 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 ATP8B4Q8TF62 1192 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 SCFD2Q8WU76 684 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 C1orf112Q9NSG2 853 aa22.88■■□□□ 1.25
LIME1-210ENST00000621325 ZNFX1Q9P2E3 1918 aaKnown RBP22.87■■□□□ 1.25
LIME1-210ENST00000621325 PDE6CP51160 858 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 GPC5P78333 572 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 CDR2Q01850 454 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 GCNT1Q02742 428 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 LAMTOR4Q0VGL1 99 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 MAP1SQ66K74 1059 aaPredicted RBP22.87■■□□□ 1.25
LIME1-210ENST00000621325 KCNV1Q6PIU1 500 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 OR5B17Q8NGF7 314 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.87■■□□□ 1.258e-8■■■□□ 15.1
LIME1-210ENST00000621325 HPCAL4Q9UM19 191 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 PGRMC1O00264 195 aaKnown RBP22.87■■□□□ 1.25
LIME1-210ENST00000621325 RAD51CO43502 376 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 HEXIM1O94992 359 aaKnown RBP22.87■■□□□ 1.25
LIME1-210ENST00000621325 ITGA4P13612 1032 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 PIK3CAP42336 1068 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 FAM193AP78312 1265 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 TRADDQ15628 312 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 ZBTB33Q86T24 672 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 RHOT2Q8IXI1 618 aa22.87■■□□□ 1.25
LIME1-210ENST00000621325 MSL3Q8N5Y2 521 aaKnown RBP22.87■■□□□ 1.25
LIME1-210ENST00000621325 ZKSCAN7Q9P0L1 754 aaPredicted RBP22.87■■□□□ 1.25
LIME1-210ENST00000621325 CNTNAP2Q9UHC6 1331 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 GRIN3BO60391 1043 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 MSCO60682 206 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 GZMAP12544 262 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 TNFSF9P41273 254 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 GUCY2DQ02846 1103 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 C10orf67Q8IYJ2 551 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 RNF149Q8NC42 400 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 MORC4Q8TE76 937 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 EPB41L5Q9HCM4 733 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 ZC3H4Q9UPT8 1303 aaKnown RBP22.86■■□□□ 1.25
LIME1-210ENST00000621325 TMEM110-MUSTN1A8MSY1 372 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 KIAA0391O15091 583 aaKnown RBP22.86■■□□□ 1.25
LIME1-210ENST00000621325 IER5Q5VY09 327 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 SND1Q7KZF4 910 aaKnown RBP eCLIP22.86■■□□□ 1.25
LIME1-210ENST00000621325 PLPPR4Q7Z2D5 763 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 RASGEF1CQ8N431 466 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 RUBCNQ92622 972 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 CCDC113Q9H0I3 377 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 APOBEC3GQ9HC16 384 aaKnown RBP22.86■■□□□ 1.25
LIME1-210ENST00000621325 CLEC11AQ9Y240 323 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 ALG6Q9Y672 507 aa22.86■■□□□ 1.25
LIME1-210ENST00000621325 ZC3H11AO75152 810 aaKnown RBP eCLIP22.85■■□□□ 1.25
LIME1-210ENST00000621325 SCP2P22307 547 aa22.85■■□□□ 1.25
LIME1-210ENST00000621325 CARSP49589 748 aaKnown RBP22.85■■□□□ 1.25
LIME1-210ENST00000621325 ICE2Q659A1 982 aa22.85■■□□□ 1.25
LIME1-210ENST00000621325 ARMCX2Q7L311 632 aa22.85■■□□□ 1.25
LIME1-210ENST00000621325 CCDC102AQ96A19 550 aa22.85■■□□□ 1.25
LIME1-210ENST00000621325 GDF3Q9NR23 364 aa22.85■■□□□ 1.25
LIME1-210ENST00000621325 TRPC6Q9Y210 931 aa22.85■■□□□ 1.25
LIME1-210ENST00000621325 IGKV6-21A0A0C4DH24 114 aa22.84■■□□□ 1.25
LIME1-210ENST00000621325 CLDN3O15551 220 aa22.84■■□□□ 1.25
LIME1-210ENST00000621325 TNNC1P63316 161 aa22.84■■□□□ 1.25
LIME1-210ENST00000621325 CPNE8Q86YQ8 564 aa22.84■■□□□ 1.25
LIME1-210ENST00000621325 ALG3Q92685 438 aa22.84■■□□□ 1.25
LIME1-210ENST00000621325 MYCBPQ99417 103 aaPredicted RBP22.84■■□□□ 1.25
LIME1-210ENST00000621325 LCMT1Q9UIC8 334 aa22.84■■□□□ 1.25
LIME1-210ENST00000621325 LDHAP00338 332 aaKnown RBP22.84■■□□□ 1.25
LIME1-210ENST00000621325 HADHBP55084 474 aaKnown RBP22.84■■□□□ 1.25
LIME1-210ENST00000621325 WDR44Q5JSH3 913 aa22.84■■□□□ 1.25
LIME1-210ENST00000621325 RHPN2Q8IUC4 686 aa22.84■■□□□ 1.25
LIME1-210ENST00000621325 BTBD6Q96KE9 485 aa22.84■■□□□ 1.25
LIME1-210ENST00000621325 TCHPQ9BT92 498 aa22.84■■□□□ 1.25
LIME1-210ENST00000621325 DDX47Q9H0S4 455 aaKnown RBP22.84■■□□□ 1.25
LIME1-210ENST00000621325 VIPAS39Q9H9C1 493 aa22.84■■□□□ 1.25
LIME1-210ENST00000621325 KRIT1O00522 736 aa22.83■■□□□ 1.25
LIME1-210ENST00000621325 FAM189A1O60320 539 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms