RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 DNM1Q05193 864 aaKnown RBP17.52■□□□□ 0.4
BRCA1-228ENST00000618469 BECN1Q14457 450 aa17.52■□□□□ 0.4
BRCA1-228ENST00000618469 DUSP6Q16828 381 aa17.52■□□□□ 0.4
BRCA1-228ENST00000618469 MPZL3Q6UWV2 235 aa17.52■□□□□ 0.4
BRCA1-228ENST00000618469 HAUS6Q7Z4H7 955 aa17.52■□□□□ 0.4
BRCA1-228ENST00000618469 DDX53Q86TM3 631 aaKnown RBP17.52■□□□□ 0.4
BRCA1-228ENST00000618469 KCNG4Q8TDN1 519 aa17.52■□□□□ 0.4
BRCA1-228ENST00000618469 AUTS2Q8WXX7 1259 aa17.52■□□□□ 0.4
BRCA1-228ENST00000618469 TCHPQ9BT92 498 aa17.52■□□□□ 0.4
BRCA1-228ENST00000618469 VN1R3Q9BXE9 311 aa17.52■□□□□ 0.4
BRCA1-228ENST00000618469 PANK2Q9BZ23 570 aa17.52■□□□□ 0.4
BRCA1-228ENST00000618469 PTPRHQ9HD43 1115 aa17.52■□□□□ 0.4
BRCA1-228ENST00000618469 CACNG4Q9UBN1 327 aa17.52■□□□□ 0.4
BRCA1-228ENST00000618469 FSD2A1L4K1 749 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 F8W810 466 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 TRAK2O60296 914 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 NR1I2O75469 434 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 BRD1O95696 1058 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 MCF2P10911 925 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 PROZP22891 400 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 AVPR2P30518 371 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 GRM5P41594 1212 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 OSTNP61366 133 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 SIGLEC14Q08ET2 396 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 COASYQ13057 564 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 BMS1Q14692 1282 aaKnown RBP17.51■□□□□ 0.39
BRCA1-228ENST00000618469 NOLC1Q14978 699 aaKnown RBP eCLIP17.51■□□□□ 0.39
BRCA1-228ENST00000618469 GLRA4Q5JXX5 417 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 SV2BQ7L1I2 683 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 SFR1Q86XK3 245 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 VN1R2Q8NFZ6 395 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 DDX12PQ92771 950 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 ASIC4Q96FT7 647 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 CDCA3Q99618 268 aaPredicted RBP17.51■□□□□ 0.39
BRCA1-228ENST00000618469 CCDC94Q9BW85 323 aaPredicted RBP17.51■□□□□ 0.39
BRCA1-228ENST00000618469 CXCL16Q9H2A7 254 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 MYO10Q9HD67 2058 aa17.51■□□□□ 0.39
BRCA1-228ENST00000618469 CITO14578 2027 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 C2orf71A6NGG8 1288 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 CASTOR2A6NHX0 329 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 MYMKA6NI61 221 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 ABLIM1O14639 778 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 HNRNPDLO14979 420 aaKnown RBP17.5■□□□□ 0.39
BRCA1-228ENST00000618469 TOM1L1O75674 476 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 CTSAP10619 480 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 NMT1P30419 496 aaKnown RBP17.5■□□□□ 0.39
BRCA1-228ENST00000618469 MATR3P43243 847 aaKnown RBP eCLIP17.5■□□□□ 0.39
BRCA1-228ENST00000618469 ME1P48163 572 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 YARSP54577 528 aaKnown RBP17.5■□□□□ 0.39
BRCA1-228ENST00000618469 TUSC3Q13454 348 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 CBX2Q14781 532 aaPredicted RBP17.5■□□□□ 0.39
BRCA1-228ENST00000618469 ATL3Q6DD88 541 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 SHC4Q6S5L8 630 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 ZPBP2Q6X784 338 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 RABGGTAQ92696 567 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 ZBTB45Q96K62 511 aaPredicted RBP17.5■□□□□ 0.39
BRCA1-228ENST00000618469 PHF7Q9BWX1 381 aaPredicted RBP17.5■□□□□ 0.39
BRCA1-228ENST00000618469 TOPORSQ9NS56 1045 aaPredicted RBP17.5■□□□□ 0.39
BRCA1-228ENST00000618469 CDH22Q9UJ99 828 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 CFAP45Q9UL16 551 aa17.5■□□□□ 0.39
BRCA1-228ENST00000618469 TRIP11Q15643 1979 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 THP07101 528 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 SRGAP2BP0DMP2 458 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 LIG4P49917 911 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 PTPN14Q15678 1187 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 AXDND1Q5T1B0 1012 aaPredicted RBP17.49■□□□□ 0.39
BRCA1-228ENST00000618469 LLGL2Q6P1M3 1020 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 MRPL43Q8N983 215 aaKnown RBP17.49■□□□□ 0.39
BRCA1-228ENST00000618469 DHX58Q96C10 678 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 FIZ1Q96SL8 496 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 PRRX2Q99811 253 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 HERC2P3Q9BVR0 1158 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 STK39Q9UEW8 545 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 TBX20Q9UMR3 447 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 ZDHHC9Q9Y397 364 aa17.49■□□□□ 0.39
BRCA1-228ENST00000618469 PDCD11Q14690 1871 aaKnown RBP17.49■□□□□ 0.39
BRCA1-228ENST00000618469 PTPRZ1P23471 2315 aaPredicted RBP17.49■□□□□ 0.39
BRCA1-228ENST00000618469 CXCL14O95715 111 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 SOD2P04179 222 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 URODP06132 367 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 IDEP14735 1019 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 SCP2P22307 547 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 HSP90AA2PQ14568 343 aaPredicted RBP17.48■□□□□ 0.39
BRCA1-228ENST00000618469 ASCL5Q7RTU5 278 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 TMEM87AQ8NBN3 555 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 HASPINQ8TF76 798 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 KCNN1Q92952 543 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 DNAJC19Q96DA6 116 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 CHAMP1Q96JM3 812 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 PAAF1Q9BRP4 392 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 COLEC11Q9BWP8 271 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 ADAM28Q9UKQ2 775 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 PCDHA7Q9UN72 937 aa17.48■□□□□ 0.39
BRCA1-228ENST00000618469 CACNA1HO95180 2353 aa17.47■□□□□ 0.39
BRCA1-228ENST00000618469 C2CD2LO14523 706 aa17.47■□□□□ 0.39
BRCA1-228ENST00000618469 CLDN3O15551 220 aa17.47■□□□□ 0.39
BRCA1-228ENST00000618469 KIF4AO95239 1232 aa17.47■□□□□ 0.39
BRCA1-228ENST00000618469 GLUD2P49448 558 aa17.47■□□□□ 0.39
BRCA1-228ENST00000618469 KRT85P78386 507 aa17.47■□□□□ 0.39
BRCA1-228ENST00000618469 MCL1Q07820 350 aa17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms