RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 TCERG1LQ5VWI1 586 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 SLC39A5Q6ZMH5 540 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 MRPL10Q7Z7H8 261 aaKnown RBP12.71□□□□□ -0.37
PDPN-211ENST00000617617 RDH13Q8NBN7 331 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 ZNF397Q8NF99 534 aaPredicted RBP12.71□□□□□ -0.37
PDPN-211ENST00000617617 TRIM44Q96DX7 344 aaPredicted RBP12.71□□□□□ -0.37
PDPN-211ENST00000617617 CPB2Q96IY4 423 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 TCHPQ9BT92 498 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 INTS2Q9H0H0 1204 aaKnown RBP12.71□□□□□ -0.37
PDPN-211ENST00000617617 RPF1Q9H9Y2 349 aaKnown RBP12.71□□□□□ -0.37
PDPN-211ENST00000617617 ABHD10Q9NUJ1 306 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 LUC7L2Q9Y383 392 aaKnown RBP12.71□□□□□ -0.37
PDPN-211ENST00000617617 ALPK3Q96L96 1907 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 MICAL3Q7RTP6 2002 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 MEFVO15553 781 aaPredicted RBP12.71□□□□□ -0.37
PDPN-211ENST00000617617 STAU1O95793 577 aaKnown RBP12.71□□□□□ -0.37
PDPN-211ENST00000617617 CASP14P31944 242 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 TNFSF9P41273 254 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 MATR3P43243 847 aaKnown RBP eCLIP12.71□□□□□ -0.37
PDPN-211ENST00000617617 TMEM62Q0P6H9 643 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 BFSP2Q13515 415 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 PPP1R13LQ8WUF5 828 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 FNBP1Q96RU3 617 aa12.71□□□□□ -0.37
PDPN-211ENST00000617617 LSM14BQ9BX40 385 aaKnown RBP12.71□□□□□ -0.37
PDPN-211ENST00000617617 INPPL1O15357 1258 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 TLR3O15455 904 aaKnown RBP12.7□□□□□ -0.38
PDPN-211ENST00000617617 ZNF623O75123 536 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 RPS6KA5O75582 802 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 TRIM21P19474 475 aaKnown RBP12.7□□□□□ -0.38
PDPN-211ENST00000617617 THPOP40225 353 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 KLK7P49862 253 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 RAB27AP51159 221 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 WNT7BP56706 349 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 LPIN1Q14693 890 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 SV2AQ7L0J3 742 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 ZBTB33Q86T24 672 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 FBXL13Q8NEE6 735 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 OR8K1Q8NGG5 319 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 ZNF668Q96K58 619 aaPredicted RBP12.7□□□□□ -0.38
PDPN-211ENST00000617617 AIPL1Q9NZN9 384 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 CNTN3Q9P232 1028 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 PLAGL2Q9UPG8 496 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 ZKSCAN5Q9Y2L8 839 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 PES1O00541 588 aaKnown RBP12.7□□□□□ -0.38
PDPN-211ENST00000617617 SKIP12755 728 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 ANXA13P27216 316 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 PDXDC1Q6P996 788 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 ENOSF1Q7L5Y1 443 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 TAF4BQ92750 862 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 SNX27Q96L92 541 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 ACAP3Q96P50 834 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 CCDC94Q9BW85 323 aaPredicted RBP12.7□□□□□ -0.38
PDPN-211ENST00000617617 VRTNQ9H8Y1 702 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 APEX2Q9UBZ4 518 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 ST3GAL5Q9UNP4 418 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 RNF225M0QZC1 329 aaPredicted RBP12.7□□□□□ -0.38
PDPN-211ENST00000617617 EPHB6O15197 1021 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 UCHL3P15374 230 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 KCNE1P15382 129 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 SLC9A1P19634 815 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 ZBTB6Q15916 424 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 DUOXA2Q1HG44 320 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 SLC10A6Q3KNW5 377 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 ZNF618Q5T7W0 954 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 PPP1R16BQ96T49 567 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 TRPV6Q9H1D0 765 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 MMRN2Q9H8L6 949 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 PDE11AQ9HCR9 933 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 NOD1Q9Y239 953 aa12.7□□□□□ -0.38
PDPN-211ENST00000617617 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.7□□□□□ -0.38
PDPN-211ENST00000617617 PTPRJQ12913 1337 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 SCN5AQ14524 2016 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 NRDCO43847 1150 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 SELPP16109 830 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 GCLMP48507 274 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 TDRD10Q5VZ19 366 aaKnown RBP12.69□□□□□ -0.38
PDPN-211ENST00000617617 CXorf38Q8TB03 319 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 STK33Q9BYT3 514 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 RAB20Q9NX57 234 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.69□□□□□ -0.38
PDPN-211ENST00000617617 CSDE1O75534 798 aaKnown RBP12.69□□□□□ -0.38
PDPN-211ENST00000617617 VNN1O95497 513 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 NPTXRO95502 500 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 KRT9P35527 623 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 GCNT1Q02742 428 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 TMEM132AQ24JP5 1023 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 TMTC1Q8IUR5 882 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 SMG8Q8ND04 991 aaKnown RBP12.69□□□□□ -0.38
PDPN-211ENST00000617617 PIN4Q9Y237 131 aaKnown RBP12.69□□□□□ -0.38
PDPN-211ENST00000617617 ATP8B3O60423 1300 aa12.69□□□□□ -0.38
PDPN-211ENST00000617617 TFRCP02786 760 aaKnown RBP12.68□□□□□ -0.38
PDPN-211ENST00000617617 CYP3A5P20815 502 aa12.68□□□□□ -0.38
PDPN-211ENST00000617617 FGFR4P22455 802 aa12.68□□□□□ -0.38
PDPN-211ENST00000617617 PRKCIP41743 596 aa12.68□□□□□ -0.38
PDPN-211ENST00000617617 PAK2Q13177 524 aa12.68□□□□□ -0.38
PDPN-211ENST00000617617 CCDC127Q96BQ5 260 aa12.68□□□□□ -0.38
PDPN-211ENST00000617617 EIF2AQ9BY44 585 aaKnown RBP12.68□□□□□ -0.38
PDPN-211ENST00000617617 TOPORSQ9NS56 1045 aaPredicted RBP12.68□□□□□ -0.38
PDPN-211ENST00000617617 FAM207AQ9NSI2 230 aaPredicted RBP12.68□□□□□ -0.38
PDPN-211ENST00000617617 LACTBL1A8MY62 500 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms