RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 ATG2AQ2TAZ0 1938 aa21.13■□□□□ 0.97
UPF1-212ENST00000601689 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.12■□□□□ 0.97
UPF1-212ENST00000601689 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.12■□□□□ 0.97
UPF1-212ENST00000601689 A0A1B0GVL5 298 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 FRMD3A2A2Y4 597 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 OGTO15294 1046 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 SOD2P04179 222 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 MYL1P05976 194 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 SLFN14P0C7P3 912 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 PFKFB1P16118 471 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 PPP2R3AQ06190 1150 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 HSP90AA2PQ14568 343 aaPredicted RBP21.12■□□□□ 0.97
UPF1-212ENST00000601689 DUSP6Q16828 381 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 ZC2HC1CQ53FD0 456 aaPredicted RBP21.12■□□□□ 0.97
UPF1-212ENST00000601689 L1TD1Q5T7N2 865 aaKnown RBP21.12■□□□□ 0.97
UPF1-212ENST00000601689 PPFIBP1Q86W92 1011 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 CD302Q8IX05 232 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 CEP120Q8N960 986 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 DDX27Q96GQ7 796 aaKnown RBP21.12■□□□□ 0.97
UPF1-212ENST00000601689 TSPAN18Q96SJ8 248 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 FIZ1Q96SL8 496 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 ZBP1Q9H171 429 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 ADAM28Q9UKQ2 775 aa21.12■□□□□ 0.97
UPF1-212ENST00000601689 SF3B1O75533 1304 aaKnown RBP eCLIP21.11■□□□□ 0.97
UPF1-212ENST00000601689 A0A1W2PQ27 194 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 A0A1W2PQ64 194 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 A0A1W2PQD8 194 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 CASTOR2A6NHX0 329 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 PTGESO14684 152 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 TRAPPC3O43617 180 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 AFMP43652 599 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 COASYQ13057 564 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 LEXMQ3ZCV2 418 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 TPRNQ4KMQ1 711 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 GLRA4Q5JXX5 417 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 CNNM4Q6P4Q7 775 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 ELMSAN1Q6PJG2 1045 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 UNC13DQ70J99 1090 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 ADGRD2Q7Z7M1 963 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 TMEM173Q86WV6 379 aaPredicted RBP21.11■□□□□ 0.97
UPF1-212ENST00000601689 POMGNT1Q8WZA1 660 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 IRAK3Q9Y616 596 aa21.11■□□□□ 0.97
UPF1-212ENST00000601689 SMIM28A0A1B0GU29 152 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 PVALEFA0A1B0GWK0 134 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 C2orf71A6NGG8 1288 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 ABLIM1O14639 778 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 PER2O15055 1255 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 LDHAP00338 332 aaKnown RBP21.1■□□□□ 0.97
UPF1-212ENST00000601689 KCNE1P15382 129 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 CREMQ03060 361 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 TFF2Q03403 129 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 ADAM15Q13444 863 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 USP41Q3LFD5 358 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 FUT10Q6P4F1 479 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 SNX27Q96L92 541 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 HERC2P3Q9BVR0 1158 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 CNTN3Q9P232 1028 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 DPP7Q9UHL4 492 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 SERTAD1Q9UHV2 236 aa21.1■□□□□ 0.97
UPF1-212ENST00000601689 AGO2Q9UKV8 859 aaKnown RBP21.1■□□□□ 0.97
UPF1-212ENST00000601689 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.09■□□□□ 0.97
UPF1-212ENST00000601689 A0A0B4J269 797 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 SPDYE4A6NLX3 237 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 B3GAT3O94766 335 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 GLUD2P49448 558 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 CTC1Q2NKJ3 1217 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 XKR4Q5GH76 650 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 KANK3Q6NY19 840 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 PDXDC1Q6P996 788 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 DCLRE1AQ6PJP8 1040 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 ALKAL1Q6UXT8 129 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 FSIP1Q8NA03 581 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 CASP10Q92851 521 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 PPP1R10Q96QC0 940 aaKnown RBP21.09■□□□□ 0.97
UPF1-212ENST00000601689 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.09■□□□□ 0.97
UPF1-212ENST00000601689 MARCH5Q9NX47 278 aa21.09■□□□□ 0.97
UPF1-212ENST00000601689 HIDE1A8MVS5 230 aa21.08■□□□□ 0.97
UPF1-212ENST00000601689 KIAA0391O15091 583 aaKnown RBP21.08■□□□□ 0.97
UPF1-212ENST00000601689 B4GALT3O60512 393 aa21.08■□□□□ 0.97
UPF1-212ENST00000601689 PPP1R37O75864 691 aa21.08■□□□□ 0.97
UPF1-212ENST00000601689 KLRC2P26717 231 aa21.08■□□□□ 0.97
UPF1-212ENST00000601689 RPL9P32969 192 aaKnown RBP21.08■□□□□ 0.97
UPF1-212ENST00000601689 POU5F1Q01860 360 aaKnown RBP21.08■□□□□ 0.97
UPF1-212ENST00000601689 COL19A1Q14993 1142 aa21.08■□□□□ 0.97
UPF1-212ENST00000601689 FAM26FQ5R3K3 315 aa21.08■□□□□ 0.97
UPF1-212ENST00000601689 GPR65Q8IYL9 337 aa21.08■□□□□ 0.97
UPF1-212ENST00000601689 FAM212AQ96EL1 285 aa21.08■□□□□ 0.97
UPF1-212ENST00000601689 PCDHGC5Q9Y5F6 944 aa21.08■□□□□ 0.97
UPF1-212ENST00000601689 H3BQ06 376 aaPredicted RBP21.07■□□□□ 0.96
UPF1-212ENST00000601689 C2CD2LO14523 706 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 EIF3DO15371 548 aaKnown RBP eCLIP21.07■□□□□ 0.96
UPF1-212ENST00000601689 ADH1AP07327 375 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 CXCL8P10145 99 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 MYBP10242 640 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 GTF2F1P35269 517 aaKnown RBP eCLIP21.07■□□□□ 0.96
UPF1-212ENST00000601689 SLC10A6Q3KNW5 377 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 SEZ6Q53EL9 994 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 BCL7CQ8WUZ0 217 aaPredicted RBP21.07■□□□□ 0.96
UPF1-212ENST00000601689 KIF12Q96FN5 646 aa21.07■□□□□ 0.96
UPF1-212ENST00000601689 BLZF1Q9H2G9 400 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms