RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 XKR4Q5GH76 650 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 ALKAL1Q6UXT8 129 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 TAS1R3Q7RTX0 852 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 SUGP1Q8IWZ8 645 aaKnown RBP17.35■□□□□ 0.37
VRK3-221ENST00000600284 FBXL6Q8N531 539 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 PIK3R5Q8WYR1 880 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 RABGGTAQ92696 567 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 PPP1R10Q96QC0 940 aaKnown RBP17.35■□□□□ 0.37
VRK3-221ENST00000600284 CCDC94Q9BW85 323 aaPredicted RBP17.35■□□□□ 0.37
VRK3-221ENST00000600284 ZDHHC7Q9NXF8 308 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 TRIOO75962 3097 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 KIF4AO95239 1232 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 PLA2G4BP0C869 781 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 MCF2P10911 925 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 PROZP22891 400 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 SLC12A3P55017 1021 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 ZNF568Q3ZCX4 644 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 RTP2Q5QGT7 225 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 FAM171A1Q5VUB5 890 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 DCLRE1AQ6PJP8 1040 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 PALB2Q86YC2 1186 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 STAMQ92783 540 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 KCNN1Q92952 543 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 B3GALT6Q96L58 329 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 PRRX2Q99811 253 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 CDT1Q9H211 546 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 CXCL16Q9H2A7 254 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 WDR6Q9NNW5 1121 aaKnown RBP17.34■□□□□ 0.37
VRK3-221ENST00000600284 LIMD1Q9UGP4 676 aa17.34■□□□□ 0.37
VRK3-221ENST00000600284 SMIM28A0A1B0GU29 152 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 SFI1A8K8P3 1242 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 H0YCG3 227 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 SLC16A4O15374 487 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 PDCP20941 246 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 SCP2P22307 547 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 STRN3Q13033 797 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 MPZL3Q6UWV2 235 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.33■□□□□ 0.36
VRK3-221ENST00000600284 TMEM161BQ8NDZ6 487 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 LNX1Q8TBB1 728 aaPredicted RBP17.33■□□□□ 0.36
VRK3-221ENST00000600284 HASPINQ8TF76 798 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 CALML4Q96GE6 196 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 DDX27Q96GQ7 796 aaKnown RBP17.33■□□□□ 0.36
VRK3-221ENST00000600284 TCHPQ9BT92 498 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 TARS2Q9BW92 718 aaKnown RBP17.33■□□□□ 0.36
VRK3-221ENST00000600284 SLC38A7Q9NVC3 462 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 LARSQ9P2J5 1176 aaKnown RBP17.33■□□□□ 0.36
VRK3-221ENST00000600284 CACNG4Q9UBN1 327 aa17.33■□□□□ 0.36
VRK3-221ENST00000600284 ABLIM1O14639 778 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 TRAPPC3O43617 180 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 TOM1L1O75674 476 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 B3GAT3O94766 335 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 HOXD11P31277 338 aaPredicted RBP17.32■□□□□ 0.36
VRK3-221ENST00000600284 LONP1P36776 959 aaKnown RBP17.32■□□□□ 0.36
VRK3-221ENST00000600284 UBA7P41226 1012 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 PSMD5Q16401 504 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 UPP1Q16831 310 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 ZPBP2Q6X784 338 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 CEP57Q86XR8 500 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 FEZF2Q8TBJ5 459 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 SMG7Q92540 1137 aaKnown RBP17.32■□□□□ 0.36
VRK3-221ENST00000600284 ZNF707Q96C28 371 aaPredicted RBP17.32■□□□□ 0.36
VRK3-221ENST00000600284 ACAP3Q96P50 834 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 CLSTN3Q9BQT9 956 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 PRKD2Q9BZL6 878 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 ODF2LQ9ULJ1 636 aa17.32■□□□□ 0.36
VRK3-221ENST00000600284 RFPL2O75678 378 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 ZMYND10O75800 440 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 SPATA31D3P0C874 917 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 MAPTP10636 758 aaKnown RBP17.31■□□□□ 0.36
VRK3-221ENST00000600284 KCNE1P15382 129 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 RPL17P18621 184 aaKnown RBP17.31■□□□□ 0.36
VRK3-221ENST00000600284 FGFR3P22607 806 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 CLCNKBP51801 687 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 RAD51AP2Q09MP3 1159 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 ARSHQ5FYA8 562 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 GLRA4Q5JXX5 417 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 PRSS55Q6UWB4 352 aaPredicted RBP17.31■□□□□ 0.36
VRK3-221ENST00000600284 SPATA31D4Q6ZUB0 917 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 GLYCTKQ8IVS8 523 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 CEP120Q8N960 986 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 PLIN2Q99541 437 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 CNTN3Q9P232 1028 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 IGSF9Q9P2J2 1179 aa17.31■□□□□ 0.36
VRK3-221ENST00000600284 CLUHO75153 1309 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 ZNF318Q5VUA4 2279 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 ASGR2P07307 311 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 HNRNPA1P09651 372 aaKnown RBP eCLIP17.3■□□□□ 0.36
VRK3-221ENST00000600284 NUBP1P53384 320 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 NCKAP1LP55160 1127 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 SF3A1Q15459 793 aaKnown RBP17.3■□□□□ 0.36
VRK3-221ENST00000600284 RTL10Q7L3V2 364 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 SNX27Q96L92 541 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 PIDD1Q9HB75 910 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.3■□□□□ 0.36
VRK3-221ENST00000600284 EPS15L1Q9UBC2 864 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 FBXW11Q9UKB1 542 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 DENND4AQ7Z401 1863 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 MYO10Q9HD67 2058 aa17.3■□□□□ 0.36
VRK3-221ENST00000600284 MTCL1Q9Y4B5 1905 aaKnown RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms