RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ADAM28Q9UKQ2 775 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 TPCN1Q9ULQ1 816 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 POLIQ9UNA4 740 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 MTF2Q9Y483 593 aaPredicted RBP9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 TENM4Q6N022 2769 aa9.6□□□□□ -0.87
SHKBP1-220ENST00000599716 LRRIQ4A6NIV6 560 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 ASAP2O43150 1006 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 DKC1O60832 514 aaKnown RBP eCLIP9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 TADA2AO75478 443 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 REC8O95072 547 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 SP9P0CG40 484 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 ATXN8OSP0DMR3 200 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 FDPSP14324 419 aaKnown RBP9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 ATP2B1P20020 1258 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 ARL2P36404 184 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 TXKP42681 527 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 USP41Q3LFD5 358 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 FAM171A1Q5VUB5 890 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 GALNT17Q6IS24 598 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 DCLRE1AQ6PJP8 1040 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 CPLX2Q6PUV4 134 aaKnown RBP9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 OTUD6AQ7L8S5 288 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 NOSTRINQ8IVI9 506 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 MAML2Q8IZL2 1156 aaPredicted RBP9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 RSPH1Q8WYR4 309 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 BSNDQ8WZ55 320 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 STAMQ92783 540 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 KXD1Q9BQD3 176 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 CLSTN3Q9BQT9 956 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 PRKD2Q9BZL6 878 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 UBN1Q9NPG3 1134 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 SNTG2Q9NY99 539 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 NCDNQ9UBB6 729 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 ORC3Q9UBD5 711 aaPredicted RBP9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 GIT1Q9Y2X7 761 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 SIT1Q9Y3P8 196 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 NOTCH4Q99466 2003 aa9.59□□□□□ -0.87
SHKBP1-220ENST00000599716 MIA3Q5JRA6 1907 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 TRIP11Q15643 1979 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 CARNS1A5YM72 827 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 ANHXE9PGG2 379 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 I3L4J1 428 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 PTGESO14684 152 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 NR1I2O75469 434 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 ZMYND10O75800 440 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 ZIC2O95409 532 aaPredicted RBP9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 C8AP07357 584 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 GCFC2P16383 781 aaKnown RBP9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 FSHRP23945 695 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 RARRES1P49788 294 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 TFDP1Q14186 410 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 HSP90AA2PQ14568 343 aaPredicted RBP9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 MXD4Q14582 209 aaPredicted RBP9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 GLRA4Q5JXX5 417 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 EEF1DP3Q658K8 133 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 SLC27A1Q6PCB7 646 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 RSPO2Q6UXX9 243 aaPredicted RBP9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 TMEM130Q8N3G9 435 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 CNNM3Q8NE01 707 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 PJA1Q8NG27 643 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 LNX1Q8TBB1 728 aaPredicted RBP9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 TNFRSF25Q93038 417 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 HSD17B14Q9BPX1 270 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 KIFC3Q9BVG8 833 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 TMEM60Q9H2L4 133 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 GOLGA2P5Q9HBQ8 144 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 FBXW11Q9UKB1 542 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 GDAQ9Y2T3 454 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 CFAP46Q8IYW2 2715 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 FANCMQ8IYD8 2048 aa9.58□□□□□ -0.88
SHKBP1-220ENST00000599716 A0A1B0GUA9 196 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 BTBD18B2RXH4 712 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 NRG2O14511 850 aaPredicted RBP9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 TBX3O15119 743 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 JAK2O60674 1132 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 MED24O75448 989 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 RECQL4O94761 1208 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 BAG4O95429 457 aaKnown RBP9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 PMLP29590 882 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 AXLP30530 894 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 KRT2P35908 639 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 GUCY1B3Q02153 619 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 NCBP1Q09161 790 aaKnown RBP9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 GRIK3Q13003 919 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 UBXN2BQ14CS0 331 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 PSMD5Q16401 504 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 CALCRLQ16602 461 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 VARS2Q5ST30 1063 aaKnown RBP9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 TSSK4Q6SA08 328 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 LRSAM1Q6UWE0 723 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 IFNLR1Q8IU57 520 aaPredicted RBP9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 C1orf210Q8IVY1 113 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 SLC7A14Q8TBB6 771 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 FGF13Q92913 245 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 CCDC51Q96ER9 411 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 CCDC43Q96MW1 224 aaKnown RBP9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 TTPALQ9BTX7 342 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 PLEKHA4Q9H4M7 779 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 PDZD7Q9H5P4 517 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 TTC12Q9H892 705 aaPredicted RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms