RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 FNBP1Q96RU3 617 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 CCDC94Q9BW85 323 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 ARHGAP39Q9C0H5 1083 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 ARGLU1Q9NWB6 273 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 RBAKQ9NYW8 714 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 SEC31AO94979 1220 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 GH1P01241 217 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 C4BPAP04003 597 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 TNNI1P19237 187 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 CLCN3P51790 818 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 FCGRTP55899 365 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 TUBB4BP68371 445 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 ZACNQ401N2 412 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 TDRD10Q5VZ19 366 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 ZPBP2Q6X784 338 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 NOP9Q86U38 636 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 TPCN2Q8NHX9 752 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 EPS8L1Q8TE68 723 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 DHX38Q92620 1227 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 MAML3Q96JK9 1138 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 ERAP1Q9NZ08 941 aa18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 NOCTQ9UK39 431 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-216ENST00000598201 TNPO2O14787 897 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 HSPA8P11142 646 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 CHRNB2P17787 502 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 CTCFP49711 727 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 DNA2P51530 1060 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 EFCAB12Q6NXP0 572 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 PLEKHH3Q7Z736 793 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 ZBTB33Q86T24 672 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 SLC47A2Q86VL8 602 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 RPUSD2Q8IZ73 545 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 CNTNAP2Q9UHC6 1331 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 A0A0A6YYK5 440 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 FAM189A1O60320 539 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 VNN1O95497 513 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 C22orf31O95567 290 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 LDHAP00338 332 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 PRKCBP05771 671 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 INSRRP14616 1297 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 ABCB4P21439 1286 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 TNFSF9P41273 254 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 IGBP1P78318 339 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 CAP1Q01518 475 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 C2orf54Q08AI8 447 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 EXOC8Q8IYI6 725 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 METTL13Q8N6R0 699 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 PPTC7Q8NI37 304 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 NPLOC4Q8TAT6 608 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 NLRP4Q96MN2 994 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 PCDHB18PQ96TA0 734 aa18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 ACO2Q99798 780 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 MRPL4Q9BYD3 311 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 RNF216Q9NWF9 866 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-216ENST00000598201 ABLIM1O14639 778 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 CLDN3O15551 220 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 ZRANB2O95218 330 aaKnown RBP eCLIP18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 HLA-DRAP01903 254 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 TMEM253P0C7T8 217 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 ZNF286BP0CG31 522 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 LBX1P52954 281 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 PTPROQ16827 1216 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 TAF3Q5VWG9 929 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 SCARA3Q6AZY7 606 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 ZNF572Q7Z3I7 529 aaPredicted RBP18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 ARHGEF26Q96DR7 871 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 MS4A14Q96JA4 679 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 OSGEPQ9NPF4 335 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 RAB21Q9UL25 225 aa18.36■□□□□ 0.53
SHKBP1-216ENST00000598201 SPDYE4A6NLX3 237 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 TOM1L1O75674 476 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 MAPK6Q16659 721 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 CC2D1AQ6P1N0 951 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 TMCO3Q6UWJ1 677 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 ZBTB8OSQ8IWT0 167 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 OR5B17Q8NGF7 314 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 EMID1Q96A84 441 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 RPGRIP1Q96KN7 1286 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 JPH2Q9BR39 696 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 THAP2Q9H0W7 228 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 NCANO14594 1321 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 SMPD1P17405 629 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 ARHGEF6Q15052 776 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 SPOPLQ6IQ16 392 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 SLC35G2Q8TBE7 412 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 CGRRF1Q99675 332 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 C16orf70Q9BSU1 422 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 TCHPQ9BT92 498 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 MINDY3Q9H8M7 445 aa18.35■□□□□ 0.53
SHKBP1-216ENST00000598201 B4GALT5O43286 388 aa18.34■□□□□ 0.53
SHKBP1-216ENST00000598201 ADCY6O43306 1168 aa18.34■□□□□ 0.53
SHKBP1-216ENST00000598201 ZC3H11AO75152 810 aaKnown RBP eCLIP18.34■□□□□ 0.53
SHKBP1-216ENST00000598201 CALCAP01258 141 aa18.34■□□□□ 0.53
SHKBP1-216ENST00000598201 VSNL1P62760 191 aa18.34■□□□□ 0.53
SHKBP1-216ENST00000598201 GCNT1Q02742 428 aa18.34■□□□□ 0.53
SHKBP1-216ENST00000598201 BIRC3Q13489 604 aa18.34■□□□□ 0.53
SHKBP1-216ENST00000598201 IFI16Q16666 785 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-216ENST00000598201 SLFN11Q7Z7L1 901 aa18.34■□□□□ 0.53
SHKBP1-216ENST00000598201 CTNNBL1Q8WYA6 563 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-216ENST00000598201 RFFLQ8WZ73 363 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms