RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	FSHR	P23945	695 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	NBL1	P41271	181 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	FXR2	P51116	673 aa	Known RBP eCLIP	11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	PPP2R5A	Q15172	486 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	DCAF4L1	Q3SXM0	396 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	LIN9	Q5TKA1	542 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	ATF7IP2	Q5U623	682 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	HAUS3	Q68CZ6	603 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	GRASP	Q7Z6J2	395 aa	Predicted RBP	11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	CCDC105	Q8IYK2	499 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	IFT74	Q96LB3	600 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	DDX19A	Q9NUU7	478 aa	Known RBP	11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	LRWD1	Q9UFC0	647 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	KIAA1024	Q9UPX6	916 aa		11.6	□□□□□ -0.55
LSM4-205	ENST00000597776	MTCL1	Q9Y4B5	1905 aa	Known RBP	11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	PRR23A	A6NEV1	266 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	PP2D1	A8MPX8	630 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	ANHX	E9PGG2	379 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776		I3L4J1	428 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	CCL16	O15467	120 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	C8A	P07357	584 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	SRF	P11831	508 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	TOB1	P50616	345 aa	Predicted RBP	11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	EFNA5	P52803	228 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	HMGN5	P82970	282 aa	Known RBP	11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	HTR4	Q13639	388 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	CEP120	Q8N960	986 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	FAM184A	Q8NB25	1140 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	DTWD2	Q8NBA8	298 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	GPR152	Q8TDT2	470 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	SNX29	Q8TEQ0	813 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	KIFAP3	Q92845	792 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	PPP1R10	Q96QC0	940 aa	Known RBP	11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	TBC1D17	Q9HA65	648 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	GOLGA2P5	Q9HBQ8	144 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	WNT16	Q9UBV4	365 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	NOL7	Q9UMY1	257 aa	Known RBP	11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	POLI	Q9UNA4	740 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	PCDHB6	Q9Y5E3	794 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	NUMBL	Q9Y6R0	609 aa		11.59	□□□□□ -0.55
LSM4-205	ENST00000597776	VWA8	A3KMH1	1905 aa		11.58	□□□□□ -0.55
LSM4-205	ENST00000597776	CCDC169	A6NNP5	214 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	EIF5B	O60841	1220 aa	Known RBP	11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	B3GAT3	O94766	335 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	MUT	P22033	750 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	FGFR3	P22607	806 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	RFX1	P22670	979 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	TKT	P29401	623 aa	Known RBP	11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	OR1D2	P34982	312 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	NPTX2	P47972	431 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	TRAPPC10	P48553	1259 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	CLCNKB	P51801	687 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	PEX3	P56589	373 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	OSTN	P61366	133 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	ELAVL2	Q12926	359 aa	Known RBP	11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	PTGDR	Q13258	359 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	ANGPT1	Q15389	498 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	IL17A	Q16552	155 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	PPM1L	Q5SGD2	360 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	CD300LG	Q6UXG3	332 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	RSPO2	Q6UXX9	243 aa	Predicted RBP	11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	DAW1	Q8N136	415 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	IGSF22	Q8N9C0	903 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	C3orf58	Q8NDZ4	430 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	ITFG1	Q8TB96	612 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	SLC7A14	Q8TBB6	771 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	FGF14	Q92915	247 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	NXPE3	Q969Y0	559 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	KIF2C	Q99661	725 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	RTP3	Q9BQQ7	232 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	RPP25	Q9BUL9	199 aa	Known RBP	11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	RUSC1	Q9BVN2	902 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	CDT1	Q9H211	546 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776	HCFC1R1	Q9NWW0	138 aa		11.58	□□□□□ -0.56
LSM4-205	ENST00000597776		E9PMD0	336 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	TMEM189-UBE2V1	I3L0A0	370 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776		K7ERI5	159 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	HIP1R	O75146	1068 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	DCN	P07585	359 aa	Known RBP	11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	HNRNPA1	P09651	372 aa	Known RBP eCLIP	11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	U2AF2	P26368	475 aa	Known RBP eCLIP	11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	CDC25A	P30304	524 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	BRCC3	P46736	316 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	SOX4	Q06945	474 aa	Predicted RBP	11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	RAB33A	Q14088	237 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	UPP1	Q16831	310 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	ZNF568	Q3ZCX4	644 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	SPECC1	Q5M775	1068 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	AXDND1	Q5T1B0	1012 aa	Predicted RBP	11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	ERICH6B	Q5W0A0	696 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	PARM1	Q6UWI2	310 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	TAS1R3	Q7RTX0	852 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	KCNK18	Q7Z418	384 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	FGF13	Q92913	245 aa		11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	NKD2	Q969F2	451 aa	Predicted RBP	11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	DDX27	Q96GQ7	796 aa	Known RBP	11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.57	□□□□□ -0.56
LSM4-205	ENST00000597776	ACO2	Q99798	780 aa	Known RBP	11.57	□□□□□ -0.56

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