RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 AGO3Q9H9G7 860 aaKnown RBP16.51■□□□□ 0.23
TRIM28-209ENST00000597423 PLCB1Q9NQ66 1216 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 RNF216Q9NWF9 866 aaPredicted RBP16.51■□□□□ 0.23
TRIM28-209ENST00000597423 ATP11BQ9Y2G3 1177 aa16.51■□□□□ 0.23
TRIM28-209ENST00000597423 LUC7L2Q9Y383 392 aaKnown RBP16.51■□□□□ 0.23
TRIM28-209ENST00000597423 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.51■□□□□ 0.23
TRIM28-209ENST00000597423 A0A1W2PQJ5 194 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 PPP3CAQ08209 521 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 TBX2Q13207 712 aaPredicted RBP16.5■□□□□ 0.23
TRIM28-209ENST00000597423 HS1BP3Q53T59 392 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 CACNA2D4Q7Z3S7 1137 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 CNGA4Q8IV77 575 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 ANKRD36BP1Q96IX9 119 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 POP1Q99575 1024 aaKnown RBP16.5■□□□□ 0.23
TRIM28-209ENST00000597423 CRACR2AQ9BSW2 395 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 EIF2AQ9BY44 585 aaKnown RBP16.5■□□□□ 0.23
TRIM28-209ENST00000597423 TMEM117Q9H0C3 514 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 NUCKS1Q9H1E3 243 aaKnown RBP16.5■□□□□ 0.23
TRIM28-209ENST00000597423 HIPK3Q9H422 1215 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 UBN1Q9NPG3 1134 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 TMEM39AQ9NV64 488 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 GCNT4Q9P109 453 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 SIK3Q9Y2K2 1263 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 DERAQ9Y315 318 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 PCDHB2Q9Y5E7 798 aa16.5■□□□□ 0.23
TRIM28-209ENST00000597423 LACTBL1A8MY62 500 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 XPOTO43592 962 aaKnown RBP16.49■□□□□ 0.23
TRIM28-209ENST00000597423 PON1P27169 355 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 FAAP100Q0VG06 881 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 KCNMA1Q12791 1236 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 BIRC3Q13489 604 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 CBWD6Q4V339 395 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 WDR44Q5JSH3 913 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 CBWD3Q5JTY5 395 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 CBWD5Q5RIA9 395 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 C1orf220Q5T0J3 134 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 UBXN11Q5T124 520 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 SV2AQ7L0J3 742 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 FMNL3Q8IVF7 1028 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 FBXL13Q8NEE6 735 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 PLEKHO2Q8TD55 490 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 DIS3LQ8TF46 1054 aaKnown RBP16.49■□□□□ 0.23
TRIM28-209ENST00000597423 CPLX3Q8WVH0 158 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 SEPT8Q92599 483 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 APBB2Q92870 758 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 LSM14BQ9BX40 385 aaKnown RBP16.49■□□□□ 0.23
TRIM28-209ENST00000597423 IFIH1Q9BYX4 1025 aaKnown RBP16.49■□□□□ 0.23
TRIM28-209ENST00000597423 FAM207AQ9NSI2 230 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-209ENST00000597423 ZNHIT6Q9NWK9 470 aaKnown RBP16.49■□□□□ 0.23
TRIM28-209ENST00000597423 RAB20Q9NX57 234 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 SNTG2Q9NY99 539 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 PARP2Q9UGN5 583 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 CAPN11Q9UMQ6 739 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 COQ4Q9Y3A0 265 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 TRIP12Q14669 1992 aaPredicted RBP16.49■□□□□ 0.23
TRIM28-209ENST00000597423 SIP14410 1827 aa16.49■□□□□ 0.23
TRIM28-209ENST00000597423 FRMPD3Q5JV73 1810 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 TTC26A0AVF1 554 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 ZNF623O75123 536 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 ZC3H11AO75152 810 aaKnown RBP eCLIP16.48■□□□□ 0.23
TRIM28-209ENST00000597423 C4BPAP04003 597 aaKnown RBP16.48■□□□□ 0.23
TRIM28-209ENST00000597423 CLTBP09497 229 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 TMEM191BP0C7N4 346 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 CXCL8P10145 99 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 ITGA4P13612 1032 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 RFX1P22670 979 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 RFC2P35250 354 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 ZBED6P86452 979 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 TFAMQ00059 246 aaKnown RBP16.48■□□□□ 0.23
TRIM28-209ENST00000597423 TRPC3Q13507 836 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 SLC10A6Q3KNW5 377 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 ZACNQ401N2 412 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 TRAF7Q6Q0C0 670 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 CEP120Q8N960 986 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 ADAM2Q99965 735 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 INTS2Q9H0H0 1204 aaKnown RBP16.48■□□□□ 0.23
TRIM28-209ENST00000597423 C1orf112Q9NSG2 853 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 FAM105AQ9NUU6 356 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 FBXL5Q9UKA1 691 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 C2CD2Q9Y426 696 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 IPPQ9Y573 584 aa16.48■□□□□ 0.23
TRIM28-209ENST00000597423 A0A0U1RQF3 1178 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 SLC9A1P19634 815 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 DSC3Q14574 896 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 TMEM132DQ14C87 1099 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 KLHDC7AQ5VTJ3 777 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 TRIM65Q6PJ69 517 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 C15orf39Q6ZRI6 1047 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 MRPL10Q7Z7H8 261 aaKnown RBP16.47■□□□□ 0.23
TRIM28-209ENST00000597423 OR8K1Q8NGG5 319 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 PANX2Q96RD6 677 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 IMPG2Q9BZV3 1241 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 RGS18Q9NS28 235 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 CEP72Q9P209 647 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 GIT1Q9Y2X7 761 aa16.47■□□□□ 0.23
TRIM28-209ENST00000597423 EOMESO95936 686 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 CASP14P31944 242 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 KRT9P35527 623 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 PIK3CAP42336 1068 aa16.46■□□□□ 0.23
TRIM28-209ENST00000597423 PTPN21Q16825 1174 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms