RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PLCB3Q01970 1234 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 TGS1Q96RS0 853 aaKnown RBP16.3■□□□□ 0.2
UPF1-204ENST00000596842 KDM4CQ9H3R0 1056 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 STK24Q9Y6E0 443 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 C5orf60A6NFR6 353 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 MMP10P09238 476 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 ATF7P17544 494 aaPredicted RBP16.3■□□□□ 0.2
UPF1-204ENST00000596842 MFAP3P55082 362 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 WNT8AQ9H1J5 351 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 NKIRAS1Q9NYS0 192 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 SEL1LQ9UBV2 794 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 CTDP1Q9Y5B0 961 aaPredicted RBP16.3■□□□□ 0.2
UPF1-204ENST00000596842 STRCQ7RTU9 1775 aa16.3■□□□□ 0.2
UPF1-204ENST00000596842 IFNB1P01574 187 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 PAEPP09466 180 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 CYP11B1P15538 503 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 CHRNB2P17787 502 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 HOXA10P31260 410 aaPredicted RBP16.29■□□□□ 0.2
UPF1-204ENST00000596842 SNRNP35Q16560 246 aaKnown RBP16.29■□□□□ 0.2
UPF1-204ENST00000596842 LMO3Q8TAP4 145 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 ACSF2Q96CM8 615 aaPredicted RBP16.29■□□□□ 0.2
UPF1-204ENST00000596842 NFIBO00712 420 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 SUN1O94901 812 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 ITGB5P18084 799 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 PREPLQ4J6C6 727 aaPredicted RBP16.29■□□□□ 0.2
UPF1-204ENST00000596842 SEPT12Q8IYM1 358 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 NT5C1BQ96P26 610 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 C11orf70Q9BRQ4 267 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 TXLNGYQ9BZA5 131 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 EHMT1Q9H9B1 1298 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 GOLGA8SH3BPF8 625 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 GOLGA8MH3BSY2 632 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 RAD17O75943 681 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 PEX5P50542 639 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 FMO1Q01740 532 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 NSMCE1Q8WV22 266 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 GMCL1Q96IK5 515 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 PLVAPQ9BX97 442 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 DMAC2Q9NW81 257 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 GGA2Q9UJY4 613 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 R3HDM2Q9Y2K5 976 aaKnown RBP16.29■□□□□ 0.2
UPF1-204ENST00000596842 SUGT1Q9Y2Z0 365 aa16.29■□□□□ 0.2
UPF1-204ENST00000596842 MRPL11Q9Y3B7 192 aaKnown RBP16.29■□□□□ 0.2
UPF1-204ENST00000596842 USP15Q9Y4E8 981 aaPredicted RBP16.29■□□□□ 0.2
UPF1-204ENST00000596842 PPIP5K2O43314 1243 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 RUNDC3BQ96NL0 473 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 PPP1R12CQ9BZL4 782 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 PCNTO95613 3336 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 ARFGEF1Q9Y6D6 1849 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 WDR91A4D1P6 747 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 HNRNPDLO14979 420 aaKnown RBP16.28■□□□□ 0.2
UPF1-204ENST00000596842 GAS8O95995 478 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 HSPA6P17066 643 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 TNNI1P19237 187 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 RRM1P23921 792 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 CHRNA5P30532 468 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 SLC8A1P32418 973 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 COL23A1Q86Y22 540 aaPredicted RBP16.28■□□□□ 0.2
UPF1-204ENST00000596842 CYP4X1Q8N118 509 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 SLC17A8Q8NDX2 589 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 SYT11Q9BT88 431 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 TMEM206Q9H813 350 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 CDK5RAP2Q96SN8 1893 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 SNX3O60493 162 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 DIAPH2O60879 1101 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 LGR5O75473 907 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 RALAP11233 206 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 KRT15P19012 456 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 PPP2R5CQ13362 524 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 XRCC4Q13426 336 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 ZNF449Q6P9G9 518 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 VSIG1Q86XK7 387 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 FAM213AQ9BRX8 229 aa16.28■□□□□ 0.2
UPF1-204ENST00000596842 DENND3A2RUS2 1198 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 UPP2O95045 317 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 ALDH5A1P51649 535 aaPredicted RBP16.27■□□□□ 0.2
UPF1-204ENST00000596842 SPOPLQ6IQ16 392 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 C11orf63Q6NUN7 778 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 PODNQ7Z5L7 613 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 C3orf20Q8ND61 904 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 PCYOX1Q9UHG3 505 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 RASA4BC9J798 803 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 RGL2O15211 777 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 RASA4O43374 803 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 ALDH1B1P30837 517 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 YWHABP31946 246 aaKnown RBP16.27■□□□□ 0.2
UPF1-204ENST00000596842 C4orf33Q8N1A6 199 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 AGAP11Q8TF27 550 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 HERPUD2Q9BSE4 406 aa16.27■□□□□ 0.2
UPF1-204ENST00000596842 SBF2Q86WG5 1849 aa16.27■□□□□ 0.19
UPF1-204ENST00000596842 CTNNA2P26232 953 aa16.27■□□□□ 0.19
UPF1-204ENST00000596842 GSCP56915 257 aaPredicted RBP16.27■□□□□ 0.19
UPF1-204ENST00000596842 CHURC1Q8WUH1 139 aa16.27■□□□□ 0.19
UPF1-204ENST00000596842 SPIRE2Q8WWL2 714 aa16.27■□□□□ 0.19
UPF1-204ENST00000596842 KIFAP3Q92845 792 aa16.27■□□□□ 0.19
UPF1-204ENST00000596842 KLHL14Q9P2G3 628 aa16.27■□□□□ 0.19
UPF1-204ENST00000596842 NPR1P16066 1061 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 RARRES1P49788 294 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 DNAJC3Q13217 504 aa16.26■□□□□ 0.19
UPF1-204ENST00000596842 UGCGQ16739 394 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms