RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 KCNH3Q9ULD8 1083 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 CFAP47Q6ZTR5 3102 aa12.27□□□□□ -0.45
VPS4B-202ENST00000588059 CASTOR2A6NHX0 329 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 NCAM2O15394 837 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 ECI2O75521 394 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 PDIA3P30101 505 aaKnown RBP12.26□□□□□ -0.45
VPS4B-202ENST00000588059 POU5F1BQ06416 359 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 TUSC3Q13454 348 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 EPHA7Q15375 998 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 PABPC1LQ4VXU2 614 aaKnown RBP12.26□□□□□ -0.45
VPS4B-202ENST00000588059 AXDND1Q5T1B0 1012 aaPredicted RBP12.26□□□□□ -0.45
VPS4B-202ENST00000588059 SLC27A1Q6PCB7 646 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 BLOC1S2Q6QNY1 142 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 OTUD6AQ7L8S5 288 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 CEP57Q86XR8 500 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 TRIM22Q8IYM9 498 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 ZNF687Q8N1G0 1237 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 HAS1Q92839 578 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 PLA2G2FQ9BZM2 168 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 HEBP1Q9NRV9 189 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 PARP2Q9UGN5 583 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.26□□□□□ -0.45
VPS4B-202ENST00000588059 TICRRQ7Z2Z1 1910 aa12.26□□□□□ -0.45
VPS4B-202ENST00000588059 A0A1B0GUA9 196 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 PTGESO14684 152 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 SLC30A4O14863 429 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 RPS6KB1P23443 525 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 EVCP57679 992 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 CYP4A11Q02928 519 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 ADCY1Q08828 1119 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 SPIRE1Q08AE8 756 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 SPEM2Q0P670 501 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 RAB33AQ14088 237 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 CTTNQ14247 550 aaKnown RBP12.25□□□□□ -0.45
VPS4B-202ENST00000588059 LPAL2Q16609 132 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 SLC5A9Q2M3M2 681 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 PPM1JQ5JR12 505 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 NCAPH2Q6IBW4 605 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 POTEHQ6S545 545 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 ZNF852Q6ZMS4 543 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 KRT25Q7Z3Z0 450 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 NETO1Q8TDF5 533 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 DYDC2Q96IM9 177 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 AIFM3Q96NN9 605 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 NFKBIZQ9BYH8 718 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 CHRDQ9H2X0 955 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 ZSWIM4Q9H7M6 989 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 MRPS17Q9Y2R5 130 aaKnown RBP12.25□□□□□ -0.45
VPS4B-202ENST00000588059 MRPS23Q9Y3D9 190 aaKnown RBP12.25□□□□□ -0.45
VPS4B-202ENST00000588059 SNX14Q9Y5W7 946 aa12.25□□□□□ -0.45
VPS4B-202ENST00000588059 TBX3O15119 743 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 CACNA1GO43497 2377 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 DEXIO95424 95 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 GCFC2P16383 781 aaKnown RBP12.24□□□□□ -0.45
VPS4B-202ENST00000588059 GLRA2P23416 452 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 OR1D2P34982 312 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 ARL2P36404 184 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 SSRP1Q08945 709 aaKnown RBP12.24□□□□□ -0.45
VPS4B-202ENST00000588059 ELAVL2Q12926 359 aaKnown RBP12.24□□□□□ -0.45
VPS4B-202ENST00000588059 TRIP11Q15643 1979 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 NAB2Q15742 525 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 UVSSAQ2YD98 709 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 ERICH6BQ5W0A0 696 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 LAIR1Q6GTX8 287 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 PPP4R3AQ6IN85 833 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 GALNT17Q6IS24 598 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 PDXDC1Q6P996 788 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 NEK8Q86SG6 692 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 FAM177A1Q8N128 213 aaPredicted RBP12.24□□□□□ -0.45
VPS4B-202ENST00000588059 DNASE1L2Q92874 299 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 MCRS1Q96EZ8 462 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 CXCL16Q9H2A7 254 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 GDE1Q9NZC3 331 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 RAB23Q9ULC3 237 aa12.24□□□□□ -0.45
VPS4B-202ENST00000588059 NDRG2Q9UN36 371 aaKnown RBP12.24□□□□□ -0.45
VPS4B-202ENST00000588059 RHOP08100 348 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 CEBPBP17676 345 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 FGFR3P22607 806 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 FCARP24071 287 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 HSPA4P34932 840 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 TANGO2Q6ICL3 276 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.23□□□□□ -0.45
VPS4B-202ENST00000588059 MAMSTRQ6ZN01 415 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 POTEDQ86YR6 584 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 ELSPBP1Q96BH3 223 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 IER2Q9BTL4 223 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 POLR3FQ9H1D9 316 aaPredicted RBP12.23□□□□□ -0.45
VPS4B-202ENST00000588059 AVENQ9NQS1 362 aaPredicted RBP12.23□□□□□ -0.45
VPS4B-202ENST00000588059 MTRRQ9UBK8 725 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 KCNJ14Q9UNX9 436 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 PDCD11Q14690 1871 aaKnown RBP12.23□□□□□ -0.45
VPS4B-202ENST00000588059 CHD6Q8TD26 2715 aa12.23□□□□□ -0.45
VPS4B-202ENST00000588059 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.22□□□□□ -0.45
VPS4B-202ENST00000588059 CCDC194A0A1B0GVG4 234 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 TTLL13PA6NNM8 815 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 CCNT1O60563 726 aaKnown RBP12.22□□□□□ -0.45
VPS4B-202ENST00000588059 LRP3O75074 770 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 DGAT1O75907 488 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 RECQL4O94761 1208 aa12.22□□□□□ -0.45
VPS4B-202ENST00000588059 SLITRK3O94933 977 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms