RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 CLASP2O75122 1294 aaKnown RBP11.88□□□□□ -0.51
CLIP3-203ENST00000586457 B3GAT3O94766 335 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 EDN1P05305 212 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 CLTAP09496 248 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 LTBRP36941 435 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 PPP2R3AQ06190 1150 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 DLX2Q07687 328 aaPredicted RBP11.88□□□□□ -0.51
CLIP3-203ENST00000586457 PKP1Q13835 747 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 COL19A1Q14993 1142 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 POSTNQ15063 836 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 GLRA4Q5JXX5 417 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 FAM171A1Q5VUB5 890 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 ADALQ6DHV7 355 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 FUT10Q6P4F1 479 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 PDXDC1Q6P996 788 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 TAS1R3Q7RTX0 852 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 SFR1Q86XK3 245 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 GSTCDQ8NEC7 633 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 HASPINQ8TF76 798 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 HVCN1Q96D96 273 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 CCDC34Q96HJ3 373 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 ACCSQ96QU6 501 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 APOL5Q9BWW9 433 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 SCAND2PQ9GZW5 306 aaPredicted RBP11.88□□□□□ -0.51
CLIP3-203ENST00000586457 TNMDQ9H2S6 317 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 RPF1Q9H9Y2 349 aaKnown RBP11.88□□□□□ -0.51
CLIP3-203ENST00000586457 MAGEF1Q9HAY2 307 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 PTPRHQ9HD43 1115 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.88□□□□□ -0.51
CLIP3-203ENST00000586457 DZANK1Q9NVP4 752 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 PRKAG3Q9UGI9 489 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 RCOR1Q9UKL0 485 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 PCDHA7Q9UN72 937 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 NUB1Q9Y5A7 615 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.88□□□□□ -0.51
CLIP3-203ENST00000586457 IRAK3Q9Y616 596 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 PRUNE2Q8WUY3 3088 aa11.88□□□□□ -0.51
CLIP3-203ENST00000586457 MYH11P35749 1972 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 A0A0C4DFX4 3053 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.87□□□□□ -0.51
CLIP3-203ENST00000586457 PTGESO14684 152 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 MBTPS2O43462 519 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 TBX10O75333 385 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 IL9P15248 144 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 PROZP22891 400 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 RPL9P32969 192 aaKnown RBP11.87□□□□□ -0.51
CLIP3-203ENST00000586457 ASIC1P78348 528 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 NUCB2P80303 420 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 GTF2BQ00403 316 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 MCL1Q07820 350 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 COASYQ13057 564 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 ALCAMQ13740 583 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 PTPN14Q15678 1187 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 SEZ6Q53EL9 994 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 ZC2HC1CQ53FD0 456 aaPredicted RBP11.87□□□□□ -0.51
CLIP3-203ENST00000586457 ATAT1Q5SQI0 421 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 ANKRD54Q6NXT1 300 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 TMEM184AQ6ZMB5 413 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 ZNF720Q7Z2F6 126 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 GJD3Q8N144 294 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 CEP120Q8N960 986 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 NOC3LQ8WTT2 800 aaKnown RBP11.87□□□□□ -0.51
CLIP3-203ENST00000586457 BCL7CQ8WUZ0 217 aaPredicted RBP11.87□□□□□ -0.51
CLIP3-203ENST00000586457 RIN2Q8WYP3 895 aaPredicted RBP11.87□□□□□ -0.51
CLIP3-203ENST00000586457 POMGNT1Q8WZA1 660 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 STAMQ92783 540 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 RIPOR3Q96MK2 946 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 NECAB3Q96P71 396 aaPredicted RBP11.87□□□□□ -0.51
CLIP3-203ENST00000586457 KLHL5Q96PQ7 755 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 TTPALQ9BTX7 342 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 HERC2P3Q9BVR0 1158 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 TMEM206Q9H813 350 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 PLEKHA5Q9HAU0 1116 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 CLEC1BQ9P126 229 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 KCNH3Q9ULD8 1083 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 HCFC2Q9Y5Z7 792 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 UNC80Q8N2C7 3258 aa11.87□□□□□ -0.51
CLIP3-203ENST00000586457 OGTO15294 1046 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 B4GALT3O60512 393 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 BRD1O95696 1058 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 CNPP09543 421 aaKnown RBP11.86□□□□□ -0.51
CLIP3-203ENST00000586457 CLCNKBP51801 687 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 ITIH3Q06033 890 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 SMAD2Q15796 467 aaKnown RBP11.86□□□□□ -0.51
CLIP3-203ENST00000586457 SHC4Q6S5L8 630 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 TAS1R1Q7RTX1 841 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 PALB2Q86YC2 1186 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 CD302Q8IX05 232 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 LRRC15Q8TF66 581 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 CCDC47Q96A33 483 aaKnown RBP11.86□□□□□ -0.51
CLIP3-203ENST00000586457 KIF12Q96FN5 646 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 SNX27Q96L92 541 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 PPP1R10Q96QC0 940 aaKnown RBP11.86□□□□□ -0.51
CLIP3-203ENST00000586457 TSPAN18Q96SJ8 248 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 ST6GALNAC4Q9H4F1 302 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 MARCH5Q9NX47 278 aa11.86□□□□□ -0.51
CLIP3-203ENST00000586457 AGO2Q9UKV8 859 aaKnown RBP11.86□□□□□ -0.51
CLIP3-203ENST00000586457 R3HCC1Q9Y3T6 440 aaKnown RBP11.86□□□□□ -0.51
CLIP3-203ENST00000586457 TDRD15B5MCY1 1934 aaKnown RBP11.86□□□□□ -0.51
CLIP3-203ENST00000586457 KIF4AO95239 1232 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 109.2 ms