RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 TMEM130Q8N3G9 435 aa13.73□□□□□ -0.21
CDK5RAP3-217ENST00000580287 EHBP1Q8NDI1 1231 aa13.73□□□□□ -0.21
CDK5RAP3-217ENST00000580287 BAP1Q92560 729 aa13.73□□□□□ -0.21
CDK5RAP3-217ENST00000580287 MMS19Q96T76 1030 aa13.73□□□□□ -0.21
CDK5RAP3-217ENST00000580287 MKNK1Q9BUB5 465 aa13.73□□□□□ -0.21
CDK5RAP3-217ENST00000580287 TMEM134Q9H6X4 195 aa13.73□□□□□ -0.21
CDK5RAP3-217ENST00000580287 AGO2Q9UKV8 859 aaKnown RBP13.73□□□□□ -0.21
CDK5RAP3-217ENST00000580287 Q9Y3F1 56 aa13.73□□□□□ -0.21
CDK5RAP3-217ENST00000580287 PCDHA13Q9Y5I0 950 aa13.73□□□□□ -0.21
CDK5RAP3-217ENST00000580287 PTCH2Q9Y6C5 1203 aa13.73□□□□□ -0.21
CDK5RAP3-217ENST00000580287 NRCAMQ92823 1304 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 CTAGE15A4D2H0 777 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 CTAGE8P0CG41 777 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 HOXD10P28358 340 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 AMPD2Q01433 879 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 IRF5Q13568 498 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 EXOC3L4Q17RC7 722 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 NBPF20Q3BBV1 942 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 SFMBT2Q5VUG0 894 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 CTAGE6Q86UF2 777 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 CTAGE4Q8IX94 777 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 C7orf31Q8N865 590 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 ACO2Q99798 780 aaKnown RBP13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 MSTO1Q9BUK6 570 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 GCNT4Q9P109 453 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 CEP72Q9P209 647 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 PPME1Q9Y570 386 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 FAM170AA1A519 330 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 H0YCG3 227 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 CLDN3O15551 220 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 PHACTR2O75167 634 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 HMGCRP04035 888 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 INHAP05111 366 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 KRT13P13646 458 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 GPC3P51654 580 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 NAP1L1P55209 391 aaKnown RBP13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 CDK17Q00537 523 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 KCTD19Q17RG1 926 aaPredicted RBP13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 DPY19L2P1Q6NXN4 242 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 TMEM192Q8IY95 271 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 GSPT2Q8IYD1 628 aaKnown RBP13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 EXOC8Q8IYI6 725 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 THNSL1Q8IYQ7 743 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 GPD1LQ8N335 351 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 OSMRQ99650 979 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.72□□□□□ -0.211e-6■□□□□ 8
CDK5RAP3-217ENST00000580287 FZD8Q9H461 694 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 PDE11AQ9HCR9 933 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 SMARCAL1Q9NZC9 954 aa13.72□□□□□ -0.21
CDK5RAP3-217ENST00000580287 A0A0B4J269 797 aa13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 LRRIQ3A6PVS8 624 aaPredicted RBP13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 HNRNPH3P31942 346 aaKnown RBP13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 MAGEA1P43355 309 aa13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 EFNA5P52803 228 aa13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 ADAM17P78536 824 aa13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 MAP2K1Q02750 393 aaPredicted RBP13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 SLC9C1Q4G0N8 1177 aa13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 INTS8Q75QN2 995 aaKnown RBP13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 PARD3BQ8TEW8 1205 aa13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 FAM212AQ96EL1 285 aa13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 MRPL4Q9BYD3 311 aaKnown RBP13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 PTPRJQ12913 1337 aa13.71□□□□□ -0.21
CDK5RAP3-217ENST00000580287 GARTP22102 1010 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 PRPF4BQ13523 1007 aaKnown RBP13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 TUBB2AQ13885 445 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 TFDP1Q14186 410 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 MYBPC2Q14324 1141 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 WHAMMP3Q1A5X7 153 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 TMEM40Q8WWA1 233 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 WNT8BQ93098 351 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 VTI1AQ96AJ9 217 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 FBXL18Q96ME1 805 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 TUBB2BQ9BVA1 445 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 TSGA10Q9BZW7 698 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 SAR1BQ9Y6B6 198 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 MYH10P35580 1976 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 COL1A2P08123 1366 aa13.71□□□□□ -0.22
CDK5RAP3-217ENST00000580287 RRN3P2A6NIE6 340 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 ACKR2O00590 384 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 ATP8B1O43520 1251 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 CYP24A1Q07973 514 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 AMHR2Q16671 573 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 BEND6Q5SZJ8 279 aaPredicted RBP13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 MAP3K21Q5TCX8 1036 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 ATF7IP2Q5U623 682 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 TXLNBQ8N3L3 684 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 CAGE1Q8TC20 777 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 ZNF516Q92618 1163 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 SPC25Q9HBM1 224 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 EHD2Q9NZN4 543 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 STYXL1Q9Y6J8 313 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 GRIN2DO15399 1336 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 C17orf102A2RUQ5 167 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 MBLAC1A4D2B0 266 aaPredicted RBP13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 ZNF233A6NK53 670 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 PDE2AO00408 941 aaPredicted RBP13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 ABLIM1O14639 778 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 TOM1L1O75674 476 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 MOCS3O95396 460 aa13.7□□□□□ -0.22
CDK5RAP3-217ENST00000580287 CXCR5P32302 372 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms