RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 MATR3P43243 847 aaKnown RBP eCLIP26.16■■□□□ 1.78
SHMT1-206ENST00000579558 KIAA1841Q6NSI8 718 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 SYCE2Q6PIF2 218 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 SV2BQ7L1I2 683 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 DYMQ7RTS9 669 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 PPFIBP1Q86W92 1011 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 KCNN1Q92952 543 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 ACAP3Q96P50 834 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 KLHL5Q96PQ7 755 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 APOL5Q9BWW9 433 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 PANK2Q9BZ23 570 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 GPR62Q9BZJ7 368 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 TBX20Q9UMR3 447 aa26.16■■□□□ 1.78
SHMT1-206ENST00000579558 LILRB3O75022 631 aa26.15■■□□□ 1.78
SHMT1-206ENST00000579558 CNPP09543 421 aaKnown RBP26.15■■□□□ 1.78
SHMT1-206ENST00000579558 KLRC2P26717 231 aa26.15■■□□□ 1.78
SHMT1-206ENST00000579558 TPRNQ4KMQ1 711 aa26.15■■□□□ 1.78
SHMT1-206ENST00000579558 HASPINQ8TF76 798 aa26.15■■□□□ 1.78
SHMT1-206ENST00000579558 SLC22A17Q8WUG5 538 aa26.15■■□□□ 1.78
SHMT1-206ENST00000579558 PPP1R10Q96QC0 940 aaKnown RBP26.15■■□□□ 1.78
SHMT1-206ENST00000579558 POP1Q99575 1024 aaKnown RBP26.15■■□□□ 1.78
SHMT1-206ENST00000579558 SF3B1O75533 1304 aaKnown RBP eCLIP26.14■■□□□ 1.788e-11■■■■■ 206.8
SHMT1-206ENST00000579558 A0A087X0B3 334 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 CLDN3O15551 220 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 KIF4AO95239 1232 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 EPCAMP16422 314 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 LIG4P49917 911 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 DSG1Q02413 1049 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 MCL1Q07820 350 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 KIAA0319Q5VV43 1072 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 PDILTQ8N807 584 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 DDX12PQ92771 950 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 SNX27Q96L92 541 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 FIZ1Q96SL8 496 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 S1PR5Q9H228 398 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 DZANK1Q9NVP4 752 aa26.14■■□□□ 1.78
SHMT1-206ENST00000579558 CITO14578 2027 aa26.14■■□□□ 1.77
SHMT1-206ENST00000579558 SMIM28A0A1B0GU29 152 aa26.13■■□□□ 1.77
SHMT1-206ENST00000579558 MYMKA6NI61 221 aa26.13■■□□□ 1.77
SHMT1-206ENST00000579558 NMT1P30419 496 aaKnown RBP26.13■■□□□ 1.77
SHMT1-206ENST00000579558 USP41Q3LFD5 358 aa26.13■■□□□ 1.77
SHMT1-206ENST00000579558 XKR4Q5GH76 650 aa26.13■■□□□ 1.77
SHMT1-206ENST00000579558 ALKAL1Q6UXT8 129 aa26.13■■□□□ 1.77
SHMT1-206ENST00000579558 SUSD6Q92537 303 aa26.13■■□□□ 1.77
SHMT1-206ENST00000579558 B3GALT6Q96L58 329 aa26.13■■□□□ 1.77
SHMT1-206ENST00000579558 CHST7Q9NS84 486 aa26.13■■□□□ 1.77
SHMT1-206ENST00000579558 C19orf67A6NJJ6 358 aa26.12■■□□□ 1.77
SHMT1-206ENST00000579558 HNRNPDLO14979 420 aaKnown RBP26.12■■□□□ 1.77
SHMT1-206ENST00000579558 CUTAO60888 179 aa26.12■■□□□ 1.77
SHMT1-206ENST00000579558 ABCD1P33897 745 aa26.12■■□□□ 1.77
SHMT1-206ENST00000579558 SEZ6Q53EL9 994 aa26.12■■□□□ 1.77
SHMT1-206ENST00000579558 SFR1Q86XK3 245 aa26.12■■□□□ 1.77
SHMT1-206ENST00000579558 PIGRP01833 764 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 ADH1AP07327 375 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 CLCN4P51793 760 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 GTF2BQ00403 316 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 ATL3Q6DD88 541 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 KCNG4Q8TDN1 519 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 RIN2Q8WYP3 895 aaPredicted RBP26.11■■□□□ 1.77
SHMT1-206ENST00000579558 DNAJC19Q96DA6 116 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 UROC1Q96N76 676 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 HAPLN2Q9GZV7 340 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 GOLGA2P5Q9HBQ8 144 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 RXFP1Q9HBX9 757 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 SLC38A7Q9NVC3 462 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 CNTN3Q9P232 1028 aa26.11■■□□□ 1.77
SHMT1-206ENST00000579558 TEX28O15482 410 aa26.1■■□□□ 1.77
SHMT1-206ENST00000579558 KCNE1P15382 129 aa26.1■■□□□ 1.77
SHMT1-206ENST00000579558 CLCNKBP51801 687 aa26.1■■□□□ 1.77
SHMT1-206ENST00000579558 CBX2Q14781 532 aaPredicted RBP26.1■■□□□ 1.77
SHMT1-206ENST00000579558 ZC2HC1CQ53FD0 456 aaPredicted RBP26.1■■□□□ 1.77
SHMT1-206ENST00000579558 RARS2Q5T160 578 aaKnown RBP26.1■■□□□ 1.77
SHMT1-206ENST00000579558 CES5AQ6NT32 575 aa26.1■■□□□ 1.77
SHMT1-206ENST00000579558 MAP4K3Q8IVH8 894 aa26.1■■□□□ 1.77
SHMT1-206ENST00000579558 KHSRPQ92945 711 aaKnown RBP eCLIP26.1■■□□□ 1.77
SHMT1-206ENST00000579558 FBXL18Q96ME1 805 aa26.1■■□□□ 1.77
SHMT1-206ENST00000579558 ZMAT2Q96NC0 199 aaKnown RBP26.1■■□□□ 1.77
SHMT1-206ENST00000579558 PHF7Q9BWX1 381 aaPredicted RBP26.1■■□□□ 1.77
SHMT1-206ENST00000579558 SEL1LQ9UBV2 794 aa26.1■■□□□ 1.77
SHMT1-206ENST00000579558 C5orf42Q9H799 3197 aa26.09■■□□□ 1.77
SHMT1-206ENST00000579558 SPDYE4A6NLX3 237 aa26.09■■□□□ 1.77
SHMT1-206ENST00000579558 B3GAT3O94766 335 aa26.09■■□□□ 1.77
SHMT1-206ENST00000579558 GAP43P17677 238 aa26.09■■□□□ 1.77
SHMT1-206ENST00000579558 DNM1Q05193 864 aaKnown RBP26.09■■□□□ 1.77
SHMT1-206ENST00000579558 ITIH3Q06033 890 aa26.09■■□□□ 1.77
SHMT1-206ENST00000579558 SOX4Q06945 474 aaPredicted RBP26.09■■□□□ 1.77
SHMT1-206ENST00000579558 ELAVL2Q12926 359 aaKnown RBP26.09■■□□□ 1.77
SHMT1-206ENST00000579558 FAM171A1Q5VUB5 890 aa26.09■■□□□ 1.77
SHMT1-206ENST00000579558 SHC4Q6S5L8 630 aa26.09■■□□□ 1.77
SHMT1-206ENST00000579558 GPR65Q8IYL9 337 aa26.09■■□□□ 1.77
SHMT1-206ENST00000579558 C12orf76Q8N812 135 aaPredicted RBP26.09■■□□□ 1.77
SHMT1-206ENST00000579558 ADAM7Q9H2U9 754 aa26.09■■□□□ 1.77
SHMT1-206ENST00000579558 ST6GALNAC4Q9H4F1 302 aa26.09■■□□□ 1.77
SHMT1-206ENST00000579558 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP26.09■■□□□ 1.77
SHMT1-206ENST00000579558 CFAP45Q9UL16 551 aa26.09■■□□□ 1.77
SHMT1-206ENST00000579558 TMEM189-UBE2V1I3L0A0 370 aa26.08■■□□□ 1.77
SHMT1-206ENST00000579558 MEFVO15553 781 aaPredicted RBP26.08■■□□□ 1.77
SHMT1-206ENST00000579558 CLTAP09496 248 aa26.08■■□□□ 1.77
SHMT1-206ENST00000579558 CXCL8P10145 99 aa26.08■■□□□ 1.77
SHMT1-206ENST00000579558 IDEP14735 1019 aa26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms