RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 POU2F2P09086 479 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 AKR1B1P15121 316 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 CLNS1AP54105 237 aaKnown RBP7.61□□□□□ -1.19
VPS53-217ENST00000575100 SKOR1P84550 965 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 SPARCL1Q14515 664 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 TAF12Q16514 161 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 HABP4Q5JVS0 413 aaKnown RBP7.61□□□□□ -1.19
VPS53-217ENST00000575100 C12orf60Q5U649 245 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 CYB5R4Q7L1T6 521 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 DAAM2Q86T65 1068 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 MB21D2Q8IYB1 491 aaPredicted RBP7.61□□□□□ -1.19
VPS53-217ENST00000575100 VWA5B2Q8N398 1253 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 CD99L2Q8TCZ2 262 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 STK35Q8TDR2 534 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 KCTD13Q8WZ19 329 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 PTPN18Q99952 460 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 NOL10Q9BSC4 688 aaKnown RBP7.61□□□□□ -1.19
VPS53-217ENST00000575100 TM6SF1Q9BZW5 370 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 PLSCR4Q9NRQ2 329 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 RABL2BQ9UNT1 228 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 ZSWIM8A7E2V4 1837 aa7.61□□□□□ -1.19
VPS53-217ENST00000575100 BLACEA4D250 179 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 DDTLA6NHG4 134 aaPredicted RBP7.6□□□□□ -1.19
VPS53-217ENST00000575100 H3BML4 177 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 LARGE1O95461 756 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 SELPP16109 830 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 ARL4CP56559 192 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 SP3Q02447 781 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 PPP2R3AQ06190 1150 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 TNFAIP1Q13829 316 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 TOB2Q14106 344 aaPredicted RBP7.6□□□□□ -1.19
VPS53-217ENST00000575100 NTRK3Q16288 839 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 PKDCCQ504Y2 493 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 SBK1Q52WX2 424 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 AKNAD1Q5T1N1 836 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 CATSPER4Q7RTX7 472 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 MAMDC2Q7Z304 686 aaPredicted RBP7.6□□□□□ -1.19
VPS53-217ENST00000575100 CMIPQ8IY22 773 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 CACNA2D3Q8IZS8 1091 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 TRAPPC12Q8WVT3 735 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 RADILQ96JH8 1075 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 ZSCAN31Q96LW9 406 aaPredicted RBP7.6□□□□□ -1.19
VPS53-217ENST00000575100 TEPSINQ96N21 525 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 NUP62CLQ9H1M0 184 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 SENP2Q9HC62 589 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 PDRG1Q9NUG6 133 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 ARPP21Q9UBL0 812 aaPredicted RBP7.6□□□□□ -1.19
VPS53-217ENST00000575100 REV1Q9UBZ9 1251 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 CORINQ9Y5Q5 1042 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 A6NLC8 198 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 TCP10L2B9ZVM9 353 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 NPTX2P47972 431 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 CDK8P49336 464 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 FXR1P51114 621 aaKnown RBP eCLIP7.6□□□□□ -1.19
VPS53-217ENST00000575100 CAP1Q01518 475 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 TYRO3Q06418 890 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 PPP2R5DQ14738 602 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 ARID5BQ14865 1188 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 BBS9Q3SYG4 887 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 MFSD4BQ5TF39 518 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 SCARA3Q6AZY7 606 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 BLOC1S2Q6QNY1 142 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 HEATR4Q86WZ0 1026 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 GALNT13Q8IUC8 556 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 GRAMD1CQ8IYS0 662 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 CHTF18Q8WVB6 975 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 ZNF333Q96JL9 665 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 IDI2Q9BXS1 227 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 DNAJC18Q9H819 358 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 VEZTQ9HBM0 779 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 THG1LQ9NWX6 298 aaKnown RBP7.6□□□□□ -1.19
VPS53-217ENST00000575100 DCAF16Q9NXF7 216 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 ZSWIM5Q9P217 1185 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 ZNF70Q9UC06 446 aaPredicted RBP7.6□□□□□ -1.19
VPS53-217ENST00000575100 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.6□□□□□ -1.19
VPS53-217ENST00000575100 CYP46A1Q9Y6A2 500 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 SIPA1L1O43166 1804 aa7.6□□□□□ -1.19
VPS53-217ENST00000575100 A0A087X0M5 115 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 A0A1B0GX30 115 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 GFRA2O00451 464 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 POLBP06746 335 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 ADH1AP07327 375 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 CKMT1AP12532 417 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 RAG1P15918 1043 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 GRK2P25098 689 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 PDIA3P30101 505 aaKnown RBP7.59□□□□□ -1.19
VPS53-217ENST00000575100 LIFRP42702 1097 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 GPR3P46089 330 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 COPS2P61201 443 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 OCRLQ01968 901 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 ST3GAL1Q11201 340 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 KRT32Q14532 448 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 ZKSCAN8Q15776 578 aaPredicted RBP7.59□□□□□ -1.19
VPS53-217ENST00000575100 SHROOM1Q2M3G4 852 aaPredicted RBP7.59□□□□□ -1.19
VPS53-217ENST00000575100 TMEM214Q6NUQ4 689 aaKnown RBP7.59□□□□□ -1.19
VPS53-217ENST00000575100 MFSD6Q6ZSS7 791 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.59□□□□□ -1.19
VPS53-217ENST00000575100 Q6ZUG5 572 aa7.59□□□□□ -1.19
VPS53-217ENST00000575100 DHX32Q7L7V1 743 aaKnown RBP7.59□□□□□ -1.19
VPS53-217ENST00000575100 DDX53Q86TM3 631 aaKnown RBP7.59□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms