RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 COL20A1Q9P218 1284 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 GTF3C4Q9UKN8 822 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 ACCSLQ4AC99 568 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 CROCCP2Q86T23 111 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 MRRFQ96E11 262 aaKnown RBP18.27■□□□□ 0.52
VPS53-215ENST00000573028 MASTLQ96GX5 879 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 NT5C1BQ96P26 610 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 HERPUD2Q9BSE4 406 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 TMOD2Q9NZR1 351 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 USTQ9Y2C2 406 aa18.27■□□□□ 0.52
VPS53-215ENST00000573028 EIF2AK2P19525 551 aaKnown RBP18.27■□□□□ 0.51
VPS53-215ENST00000573028 YWHABP31946 246 aaKnown RBP18.27■□□□□ 0.51
VPS53-215ENST00000573028 GBP2P32456 591 aaPredicted RBP18.27■□□□□ 0.51
VPS53-215ENST00000573028 UGCGQ16739 394 aa18.27■□□□□ 0.51
VPS53-215ENST00000573028 HP1BP3Q5SSJ5 553 aaPredicted RBP18.27■□□□□ 0.51
VPS53-215ENST00000573028 CYP4F22Q6NT55 531 aa18.27■□□□□ 0.51
VPS53-215ENST00000573028 CYFIP1Q7L576 1253 aa18.27■□□□□ 0.51
VPS53-215ENST00000573028 SERPINA10Q9UK55 444 aa18.27■□□□□ 0.51
VPS53-215ENST00000573028 TMX2Q9Y320 296 aa18.27■□□□□ 0.51
VPS53-215ENST00000573028 MGRN1O60291 552 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 ELF1P32519 619 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 QARSP47897 775 aaKnown RBP18.26■□□□□ 0.51
VPS53-215ENST00000573028 KRT39Q6A163 491 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 CAPN12Q6ZSI9 719 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 SHC3Q92529 594 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 PLVAPQ9BX97 442 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 ADAM33Q9BZ11 813 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 ECT2Q9H8V3 914 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 MCM8Q9UJA3 840 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 ANAPC5Q9UJX4 755 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 R3HDM2Q9Y2K5 976 aaKnown RBP18.26■□□□□ 0.51
VPS53-215ENST00000573028 USP20Q9Y2K6 914 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 USP15Q9Y4E8 981 aaPredicted RBP18.26■□□□□ 0.51
VPS53-215ENST00000573028 ATF2P15336 505 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 STX2P32856 288 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 PDE6BP35913 854 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 CDR2Q01850 454 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 SP4Q02446 784 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 FAM47EQ6ZV65 393 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 STAMBPL1Q96FJ0 436 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 PNMA3Q9UL41 463 aa18.26■□□□□ 0.51
VPS53-215ENST00000573028 O00370 1275 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 CYP1A2P05177 515 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 SCP2P22307 547 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 MYO1EQ12965 1108 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 CYP1B1Q16678 543 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 TRMT10CQ7L0Y3 403 aaKnown RBP18.25■□□□□ 0.51
VPS53-215ENST00000573028 PASD1Q8IV76 773 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 RIT2Q99578 217 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 SLC12A4Q9UP95 1085 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 P4HA2O15460 535 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 SORBS3O60504 671 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 RRM1P23921 792 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 ADSSP30520 456 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 SLC8A1P32418 973 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 SPP2Q13103 211 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 MPP2Q14168 576 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 CYP4X1Q8N118 509 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 POMGNT1Q8WZA1 660 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 PRCCQ92733 491 aaPredicted RBP18.25■□□□□ 0.51
VPS53-215ENST00000573028 KIFAP3Q92845 792 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 TRIM33Q9UPN9 1127 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 SIPA1L1O43166 1804 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 SUN1O94901 812 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 CNGA1P29973 690 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 VSTM1Q6UX27 236 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 KLHL29Q96CT2 875 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 SNF8Q96H20 258 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 RANBP17Q9H2T7 1088 aaKnown RBP18.25■□□□□ 0.51
VPS53-215ENST00000573028 KLHL11Q9NVR0 708 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 UVRAGQ9P2Y5 699 aa18.25■□□□□ 0.51
VPS53-215ENST00000573028 DENND3A2RUS2 1198 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 IGF2BP3O00425 579 aaKnown RBP eCLIP18.24■□□□□ 0.51
VPS53-215ENST00000573028 GAS8O95995 478 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 MYBPC2Q14324 1141 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 GSTA5Q7RTV2 222 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 MORC4Q8TE76 937 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 PSPC1Q8WXF1 523 aaKnown RBP18.24■□□□□ 0.51
VPS53-215ENST00000573028 LRRC19Q9H756 370 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 RAB20Q9NX57 234 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 ENTPD3O75355 529 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 CHRNA5P30532 468 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 CLNS1AP54105 237 aaKnown RBP18.24■□□□□ 0.51
VPS53-215ENST00000573028 MTMR1Q13613 665 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 ACAD10Q6JQN1 1059 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 NLGN1Q8N2Q7 840 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 FBXL13Q8NEE6 735 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 HELQQ8TDG4 1101 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 PARD3BQ8TEW8 1205 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 TGS1Q96RS0 853 aaKnown RBP18.24■□□□□ 0.51
VPS53-215ENST00000573028 TMEM109Q9BVC6 243 aa18.24■□□□□ 0.51
VPS53-215ENST00000573028 TP73O15350 636 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 TTC4O95801 387 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 WLSQ5T9L3 541 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 B3GNT9Q6UX72 402 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 ZNF365Q70YC5 407 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 VTI1AQ96AJ9 217 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 BICD1Q96G01 975 aa18.23■□□□□ 0.51
VPS53-215ENST00000573028 ROPN1BQ9BZX4 212 aaPredicted RBP18.23■□□□□ 0.51
VPS53-215ENST00000573028 ROPN1Q9HAT0 212 aaPredicted RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms