RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 ING5Q8WYH8 240 aa21.24■□□□□ 0.99
NUP88-203ENST00000572019 TTC12Q9H892 705 aaPredicted RBP21.24■□□□□ 0.99
NUP88-203ENST00000572019 ORC3Q9UBD5 711 aaPredicted RBP21.24■□□□□ 0.99
NUP88-203ENST00000572019 PCDHA12Q9UN75 941 aa21.24■□□□□ 0.99
NUP88-203ENST00000572019 POLIQ9UNA4 740 aa21.24■□□□□ 0.99
NUP88-203ENST00000572019 ZMYM2Q9UBW7 1377 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 PFKFB2O60825 505 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 BAG4O95429 457 aaKnown RBP21.23■□□□□ 0.99
NUP88-203ENST00000572019 SPATA31C1P0DKV0 1188 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 FOSBP53539 338 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 MLF2Q15773 248 aaPredicted RBP21.23■□□□□ 0.99
NUP88-203ENST00000572019 CALCRLQ16602 461 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 EEF1DP3Q658K8 133 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 CD300LGQ6UXG3 332 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 PPP4R3CPQ6ZMV5 832 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 NOSTRINQ8IVI9 506 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 SLC7A14Q8TBB6 771 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 RUBCNQ92622 972 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 TMEM60Q9H2L4 133 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 FZD8Q9H461 694 aa21.23■□□□□ 0.99
NUP88-203ENST00000572019 KANSL1LA0AUZ9 987 aa21.22■□□□□ 0.99
NUP88-203ENST00000572019 SHISA7A6NL88 538 aa21.22■□□□□ 0.99
NUP88-203ENST00000572019 LARGE1O95461 756 aa21.22■□□□□ 0.99
NUP88-203ENST00000572019 TXKP42681 527 aa21.22■□□□□ 0.99
NUP88-203ENST00000572019 CREMQ03060 361 aa21.22■□□□□ 0.99
NUP88-203ENST00000572019 SLC44A4Q53GD3 710 aa21.22■□□□□ 0.99
NUP88-203ENST00000572019 CDCA2Q69YH5 1023 aaPredicted RBP21.22■□□□□ 0.99
NUP88-203ENST00000572019 NPAS3Q8IXF0 933 aa21.22■□□□□ 0.99
NUP88-203ENST00000572019 NECAB1Q8N987 351 aa21.22■□□□□ 0.99
NUP88-203ENST00000572019 MTMR9Q96QG7 549 aa21.22■□□□□ 0.99
NUP88-203ENST00000572019 NAP1L4Q99733 375 aaKnown RBP21.22■□□□□ 0.99
NUP88-203ENST00000572019 PLA2G2FQ9BZM2 168 aa21.22■□□□□ 0.99
NUP88-203ENST00000572019 POLD4Q9HCU8 107 aa21.22■□□□□ 0.99
NUP88-203ENST00000572019 DNMT3BQ9UBC3 853 aaKnown RBP21.22■□□□□ 0.99
NUP88-203ENST00000572019 NRG2O14511 850 aaPredicted RBP21.21■□□□□ 0.99
NUP88-203ENST00000572019 CDKL5O76039 1030 aa21.21■□□□□ 0.99
NUP88-203ENST00000572019 HNRNPA1P09651 372 aaKnown RBP eCLIP21.21■□□□□ 0.99
NUP88-203ENST00000572019 KRT2P35908 639 aa21.21■□□□□ 0.99
NUP88-203ENST00000572019 UBXN2BQ14CS0 331 aa21.21■□□□□ 0.99
NUP88-203ENST00000572019 SLC5A9Q2M3M2 681 aa21.21■□□□□ 0.99
NUP88-203ENST00000572019 GLRA4Q5JXX5 417 aa21.21■□□□□ 0.99
NUP88-203ENST00000572019 LIN9Q5TKA1 542 aa21.21■□□□□ 0.99
NUP88-203ENST00000572019 ZC3H14Q6PJT7 736 aaKnown RBP21.21■□□□□ 0.99
NUP88-203ENST00000572019 SPATA6Q9NWH7 488 aaPredicted RBP21.21■□□□□ 0.99
NUP88-203ENST00000572019 DLL3Q9NYJ7 618 aa21.21■□□□□ 0.99
NUP88-203ENST00000572019 ZFP37Q9Y6Q3 630 aaPredicted RBP21.21■□□□□ 0.99
NUP88-203ENST00000572019 COL4A2P08572 1712 aa21.21■□□□□ 0.99
NUP88-203ENST00000572019 F5P12259 2224 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 BTBD18B2RXH4 712 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 I3L4J1 428 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 MED24O75448 989 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 OR1D2P34982 312 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 AXDND1Q5T1B0 1012 aaPredicted RBP21.2■□□□□ 0.98
NUP88-203ENST00000572019 TSSK4Q6SA08 328 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 C3orf58Q8NDZ4 430 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 KIFC3Q9BVG8 833 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 CCDC113Q9H0I3 377 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 LTB4R2Q9NPC1 389 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 PRMT7Q9NVM4 692 aaPredicted RBP21.2■□□□□ 0.98
NUP88-203ENST00000572019 GDAQ9Y2T3 454 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 CACNA1BQ00975 2339 aa21.2■□□□□ 0.98
NUP88-203ENST00000572019 FAM170BA6NMN3 283 aa21.19■□□□□ 0.98
NUP88-203ENST00000572019 THP07101 528 aa21.19■□□□□ 0.98
NUP88-203ENST00000572019 XBP1P17861 261 aa21.19■□□□□ 0.98
NUP88-203ENST00000572019 LIG1P18858 919 aa21.19■□□□□ 0.98
NUP88-203ENST00000572019 TARSP26639 723 aaKnown RBP21.19■□□□□ 0.98
NUP88-203ENST00000572019 HOXA9P31269 272 aa21.19■□□□□ 0.98
NUP88-203ENST00000572019 RAB33AQ14088 237 aa21.19■□□□□ 0.98
NUP88-203ENST00000572019 PUM1Q14671 1186 aaKnown RBP eCLIP21.19■□□□□ 0.98
NUP88-203ENST00000572019 FAM187BQ17R55 369 aa21.19■□□□□ 0.98
NUP88-203ENST00000572019 RSPO4Q2I0M5 234 aaPredicted RBP21.19■□□□□ 0.98
NUP88-203ENST00000572019 CATSPER3Q86XQ3 398 aa21.19■□□□□ 0.98
NUP88-203ENST00000572019 CCDC43Q96MW1 224 aaKnown RBP21.19■□□□□ 0.98
NUP88-203ENST00000572019 GOLGA2P5Q9HBQ8 144 aa21.19■□□□□ 0.98
NUP88-203ENST00000572019 TICRRQ7Z2Z1 1910 aa21.19■□□□□ 0.98
NUP88-203ENST00000572019 TPRP12270 2363 aaKnown RBP21.18■□□□□ 0.98
NUP88-203ENST00000572019 NEMFO60524 1076 aa21.18■□□□□ 0.98
NUP88-203ENST00000572019 FGFR3P22607 806 aa21.18■□□□□ 0.98
NUP88-203ENST00000572019 CSTF1Q05048 431 aaKnown RBP21.18■□□□□ 0.98
NUP88-203ENST00000572019 MTSS1LQ765P7 747 aa21.18■□□□□ 0.98
NUP88-203ENST00000572019 SHDQ96IW2 340 aa21.18■□□□□ 0.98
NUP88-203ENST00000572019 PRIMPOLQ96LW4 560 aa21.18■□□□□ 0.98
NUP88-203ENST00000572019 MTRRQ9UBK8 725 aa21.18■□□□□ 0.98
NUP88-203ENST00000572019 CDY1Q9Y6F8 540 aa21.18■□□□□ 0.98
NUP88-203ENST00000572019 N4BP3O15049 544 aa21.17■□□□□ 0.98
NUP88-203ENST00000572019 EPB41L2O43491 1005 aaKnown RBP21.17■□□□□ 0.98
NUP88-203ENST00000572019 JAK2O60674 1132 aa21.17■□□□□ 0.98
NUP88-203ENST00000572019 KINO60870 393 aaKnown RBP21.17■□□□□ 0.98
NUP88-203ENST00000572019 ATP2B1P20020 1258 aa21.17■□□□□ 0.98
NUP88-203ENST00000572019 TKTP29401 623 aaKnown RBP21.17■□□□□ 0.98
NUP88-203ENST00000572019 BRCC3P46736 316 aa21.17■□□□□ 0.98
NUP88-203ENST00000572019 CLCNKBP51801 687 aa21.17■□□□□ 0.98
NUP88-203ENST00000572019 FZD5Q13467 585 aa21.17■□□□□ 0.98
NUP88-203ENST00000572019 PRPF4BQ13523 1007 aaKnown RBP21.17■□□□□ 0.98
NUP88-203ENST00000572019 PABPC1LQ4VXU2 614 aaKnown RBP21.17■□□□□ 0.98
NUP88-203ENST00000572019 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.17■□□□□ 0.98
NUP88-203ENST00000572019 TPRG1Q6ZUI0 275 aa21.17■□□□□ 0.98
NUP88-203ENST00000572019 MCRS1Q96EZ8 462 aa21.17■□□□□ 0.98
NUP88-203ENST00000572019 DDX27Q96GQ7 796 aaKnown RBP21.17■□□□□ 0.98
NUP88-203ENST00000572019 BCO2Q9BYV7 579 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms