RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 DPH6Q7L8W6 267 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 FAM71AQ8IYT1 594 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 ANKRD13AQ8IZ07 590 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 DNERQ8NFT8 737 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 PBKQ96KB5 322 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 NEUROG2Q9H2A3 272 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 ST6GALNAC4Q9H4F1 302 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.66□□□□□ -0.7
VPS53-206ENST00000570359 CALCOCO1Q9P1Z2 691 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 BCCIPQ9P287 314 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS53-206ENST00000570359 RBPJLQ9UBG7 517 aa10.66□□□□□ -0.7
VPS53-206ENST00000570359 CNOT8Q9UFF9 292 aaKnown RBP10.66□□□□□ -0.7
VPS53-206ENST00000570359 MAFBQ9Y5Q3 323 aaPredicted RBP10.66□□□□□ -0.7
VPS53-206ENST00000570359 TCRBV7S2A1N4TA0A589 114 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 AGPSO00116 658 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 CNMDO75829 334 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 KRT19P08727 400 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 TXNP10599 105 aaKnown RBP10.65□□□□□ -0.7
VPS53-206ENST00000570359 FLT3P36888 993 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 ATP1A2P50993 1020 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 TFAMQ00059 246 aaKnown RBP10.65□□□□□ -0.7
VPS53-206ENST00000570359 SNX1Q13596 522 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 MYBPC2Q14324 1141 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 BRDTQ58F21 947 aaPredicted RBP10.65□□□□□ -0.7
VPS53-206ENST00000570359 SH3D19Q5HYK7 790 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 ERO1BQ86YB8 467 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 UHMK1Q8TAS1 419 aaKnown RBP10.65□□□□□ -0.7
VPS53-206ENST00000570359 SHC3Q92529 594 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 ARL8AQ96BM9 186 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 C11orf70Q9BRQ4 267 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 SYT17Q9BSW7 474 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 MTMR12Q9C0I1 747 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 PDLIM7Q9NR12 457 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 NRBP2Q9NSY0 501 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 KLHL11Q9NVR0 708 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 SUCLA2Q9P2R7 463 aaPredicted RBP10.65□□□□□ -0.7
VPS53-206ENST00000570359 ARID2Q68CP9 1835 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 PAPPA2Q9BXP8 1791 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 NCANO14594 1321 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 DDX3YO15523 660 aaKnown RBP10.65□□□□□ -0.7
VPS53-206ENST00000570359 CLDN3O15551 220 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 EXTL3O43909 919 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 RTN2O75298 545 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 ZNF286BP0CG31 522 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 PAK2Q13177 524 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 FAM160B1Q5W0V3 765 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 FAM71BQ8TC56 605 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 UBLCP1Q8WVY7 318 aaPredicted RBP10.65□□□□□ -0.7
VPS53-206ENST00000570359 SEPT1Q8WYJ6 367 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 C18orf8Q96DM3 657 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 HES6Q96HZ4 224 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 MFSD14AQ96MC6 490 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 SCLT1Q96NL6 688 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 ZIM3Q96PE6 472 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 RNF19AQ9NV58 838 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 ANAPC7Q9UJX3 599 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 STXBP5LQ9Y2K9 1186 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 WDR90Q96KV7 1748 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 EVPLQ92817 2033 aa10.65□□□□□ -0.7
VPS53-206ENST00000570359 A0A0G2JLL6 359 aaPredicted RBP10.65□□□□□ -0.71
VPS53-206ENST00000570359 GOLGA6CA6NDK9 693 aa10.65□□□□□ -0.71
VPS53-206ENST00000570359 SMIM23A6NLE4 172 aa10.65□□□□□ -0.71
VPS53-206ENST00000570359 BTNL10A8MVZ5 291 aa10.65□□□□□ -0.71
VPS53-206ENST00000570359 GOLGA6DP0CG33 693 aa10.65□□□□□ -0.71
VPS53-206ENST00000570359 CFAP58Q5T655 872 aa10.65□□□□□ -0.71
VPS53-206ENST00000570359 DPY19L2Q6NUT2 758 aa10.65□□□□□ -0.71
VPS53-206ENST00000570359 CRELD2Q6UXH1 353 aaPredicted RBP10.65□□□□□ -0.71
VPS53-206ENST00000570359 PRRT2Q7Z6L0 340 aaPredicted RBP10.65□□□□□ -0.71
VPS53-206ENST00000570359 USP37Q86T82 979 aa10.65□□□□□ -0.71
VPS53-206ENST00000570359 AFAP1L1Q8TED9 768 aa10.65□□□□□ -0.71
VPS53-206ENST00000570359 CYFIP2Q96F07 1278 aa10.65□□□□□ -0.71
VPS53-206ENST00000570359 DHX33Q9H6R0 707 aaKnown RBP10.65□□□□□ -0.71
VPS53-206ENST00000570359 APOBEC3GQ9HC16 384 aaKnown RBP10.65□□□□□ -0.71
VPS53-206ENST00000570359 GOLGA6AQ9NYA3 693 aa10.65□□□□□ -0.71
VPS53-206ENST00000570359 OTOFQ9HC10 1997 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 PTPRFP10586 1907 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 THAP12O43422 761 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 VNN1O95497 513 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 CYP2C19P33261 490 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 GJA5P36382 358 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 NAMPTP43490 491 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 KCNJ1P48048 391 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 GPC3P51654 580 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 PPATQ06203 517 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 NEDD9Q14511 834 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 ZNF572Q7Z3I7 529 aaPredicted RBP10.64□□□□□ -0.71
VPS53-206ENST00000570359 SLC17A8Q8NDX2 589 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 PSPC1Q8WXF1 523 aaKnown RBP10.64□□□□□ -0.71
VPS53-206ENST00000570359 NTPCRQ9BSD7 190 aaKnown RBP10.64□□□□□ -0.71
VPS53-206ENST00000570359 NXF1Q9UBU9 619 aaKnown RBP10.64□□□□□ -0.71
VPS53-206ENST00000570359 AGTPBP1Q9UPW5 1226 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 A0A0A6YYK5 440 aaPredicted RBP10.64□□□□□ -0.71
VPS53-206ENST00000570359 P4HA2O15460 535 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 CST3P01034 146 aaPredicted RBP10.64□□□□□ -0.71
VPS53-206ENST00000570359 WEE2P0C1S8 567 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 GARTP22102 1010 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 RFX1P22670 979 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 RRM1P23921 792 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 VPS41P49754 854 aa10.64□□□□□ -0.71
VPS53-206ENST00000570359 LAMTOR4Q0VGL1 99 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms