RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 THADAQ6YHU6 1953 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 WDR27A2RRH5 827 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 SPECC1L-ADORA2AF8WAN1 911 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 J3QKU1 62 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 DCLK1O15075 740 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 PSAPP07602 524 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 CTHP32929 405 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 RDXP35241 583 aaKnown RBP12.6□□□□□ -0.39
CDH3-208ENST00000569036 VIPR2P41587 438 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 KPNA1P52294 538 aaPredicted RBP12.6□□□□□ -0.39
CDH3-208ENST00000569036 CDC42EP1Q00587 391 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 ZNF410Q86VK4 478 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 SYNPOQ8N3V7 929 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 SMG8Q8ND04 991 aaKnown RBP12.6□□□□□ -0.39
CDH3-208ENST00000569036 LNX1Q8TBB1 728 aaPredicted RBP12.6□□□□□ -0.39
CDH3-208ENST00000569036 CSGALNACT1Q8TDX6 532 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 RABGGTAQ92696 567 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 ZFP42Q96MM3 310 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 C8orf33Q9H7E9 229 aaPredicted RBP12.6□□□□□ -0.39
CDH3-208ENST00000569036 UBN1Q9NPG3 1134 aa12.6□□□□□ -0.39
CDH3-208ENST00000569036 SF3B1O75533 1304 aaKnown RBP eCLIP12.6□□□□□ -0.39
CDH3-208ENST00000569036 KIF26AQ9ULI4 1882 aaPredicted RBP12.59□□□□□ -0.39
CDH3-208ENST00000569036 MYBPHLA2RUH7 354 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 IPO5O00410 1097 aaKnown RBP12.59□□□□□ -0.39
CDH3-208ENST00000569036 ATXN7O15265 892 aaPredicted RBP12.59□□□□□ -0.39
CDH3-208ENST00000569036 ITGA4P13612 1032 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 MFAP1P55081 439 aaKnown RBP12.59□□□□□ -0.39
CDH3-208ENST00000569036 FAM193AP78312 1265 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 IRX4P78413 519 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 PRKCEQ02156 737 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 PON2Q15165 354 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 IMMTQ16891 758 aaKnown RBP12.59□□□□□ -0.39
CDH3-208ENST00000569036 ZNF423Q2M1K9 1284 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 ZNF746Q6NUN9 644 aaPredicted RBP12.59□□□□□ -0.39
CDH3-208ENST00000569036 CENPQQ7L2Z9 268 aaPredicted RBP12.59□□□□□ -0.39
CDH3-208ENST00000569036 NIPA1Q7RTP0 329 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 SMAP1Q8IYB5 467 aaPredicted RBP12.59□□□□□ -0.39
CDH3-208ENST00000569036 ZNF843Q8N446 348 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 SMARCD2Q92925 531 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 ZSWIM3Q96MP5 696 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 TTPALQ9BTX7 342 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 SLC8A2Q9UPR5 921 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 PCDHA10Q9Y5I2 948 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 TEX15Q9BXT5 2789 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 COL12A1Q99715 3063 aa12.59□□□□□ -0.39
CDH3-208ENST00000569036 CCDC194A0A1B0GVG4 234 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 MEFVO15553 781 aaPredicted RBP12.58□□□□□ -0.4
CDH3-208ENST00000569036 HOXA11P31270 313 aaPredicted RBP12.58□□□□□ -0.4
CDH3-208ENST00000569036 CCR2P41597 374 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 RAB33AQ14088 237 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 KARSQ15046 597 aaKnown RBP12.58□□□□□ -0.4
CDH3-208ENST00000569036 RALGPS2Q86X27 583 aaPredicted RBP12.58□□□□□ -0.4
CDH3-208ENST00000569036 TICAM2Q86XR7 235 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 RHPN2Q8IUC4 686 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 KSR1Q8IVT5 923 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 MFSD6LQ8IWD5 586 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 FAM200AQ8TCP9 573 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 NLRP4Q96MN2 994 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 RNF39Q9H2S5 420 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 NRBP2Q9NSY0 501 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 CACNG4Q9UBN1 327 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 IPPQ9Y573 584 aa12.58□□□□□ -0.4
CDH3-208ENST00000569036 UPK3BL1B0FP48 263 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 UPK3BL2E5RIL1 263 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 FAM86B1E9PN63 330 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 IFIT3O14879 490 aaKnown RBP12.57□□□□□ -0.4
CDH3-208ENST00000569036 TADA2AO75478 443 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 FAM86B2P0C5J1 330 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 PTPN2P17706 415 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 PI4KAP42356 2102 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 SEMA3BQ13214 749 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 TARBP2Q15633 366 aaKnown RBP12.57□□□□□ -0.4
CDH3-208ENST00000569036 CCNI2Q6ZMN8 369 aaPredicted RBP12.57□□□□□ -0.4
CDH3-208ENST00000569036 RTL10Q7L3V2 364 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 PLA2G4DQ86XP0 818 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 CEP57Q86XR8 500 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 EXOC6Q8TAG9 804 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 HASPINQ8TF76 798 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 CORO1BQ9BR76 489 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 ANO3Q9BYT9 981 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 TRPV4Q9HBA0 871 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 IFT122Q9HBG6 1241 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 POLR3BQ9NW08 1133 aaPredicted RBP12.57□□□□□ -0.4
CDH3-208ENST00000569036 TCEAL9Q9UHQ7 104 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 ATMQ13315 3056 aa12.57□□□□□ -0.4
CDH3-208ENST00000569036 IGLV3-22A0A075B6J6 115 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 IGKV6-21A0A0C4DH24 114 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 HEPACAM2A8MVW5 462 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 CHADO15335 359 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 MICAL2O94851 1124 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 PLEKHA8P1O95397 391 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 SMARCA1P28370 1054 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 OR1D2P34982 312 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 ZNF76P36508 570 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 SREBF1P36956 1147 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 MAPK8P45983 427 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 DNM2P50570 870 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 HSP90AA2PQ14568 343 aaPredicted RBP12.56□□□□□ -0.4
CDH3-208ENST00000569036 UGCGQ16739 394 aa12.56□□□□□ -0.4
CDH3-208ENST00000569036 FAM171A1Q5VUB5 890 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms