RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 APBB1IPQ7Z5R6 666 aaPredicted RBP16.47■□□□□ 0.23
VPS39-210ENST00000568357 RNF168Q8IYW5 571 aaPredicted RBP16.47■□□□□ 0.23
VPS39-210ENST00000568357 DDX12PQ92771 950 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 HAPLN2Q9GZV7 340 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 CD207Q9UJ71 328 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 TBX20Q9UMR3 447 aa16.47■□□□□ 0.23
VPS39-210ENST00000568357 KMT2EQ8IZD2 1858 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.46■□□□□ 0.23
VPS39-210ENST00000568357 CASTOR2A6NHX0 329 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 H0YCG3 227 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 MBTPS2O43462 519 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 CUTAO60888 179 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 SOD2P04179 222 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 IGFBP6P24592 240 aaPredicted RBP16.46■□□□□ 0.23
VPS39-210ENST00000568357 STAT6P42226 847 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 GTF2BQ00403 316 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 SEZ6Q53EL9 994 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 ZC2HC1CQ53FD0 456 aaPredicted RBP16.46■□□□□ 0.23
VPS39-210ENST00000568357 XKR4Q5GH76 650 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 GLRA4Q5JXX5 417 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 ATL3Q6DD88 541 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 DNAJC19Q96DA6 116 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 CHAMP1Q96JM3 812 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 PPP1R10Q96QC0 940 aaKnown RBP16.46■□□□□ 0.23
VPS39-210ENST00000568357 CCDC94Q9BW85 323 aaPredicted RBP16.46■□□□□ 0.23
VPS39-210ENST00000568357 GPR62Q9BZJ7 368 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 ANKFY1Q9P2R3 1169 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 RCOR1Q9UKL0 485 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 PCDHA7Q9UN72 937 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 HCFC2Q9Y5Z7 792 aa16.46■□□□□ 0.23
VPS39-210ENST00000568357 SMIM28A0A1B0GU29 152 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 K7ENM7 598 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 CLDN3O15551 220 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 HARSP12081 509 aaKnown RBP16.45■□□□□ 0.22
VPS39-210ENST00000568357 MCL1Q07820 350 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 SMAD4Q13485 552 aaKnown RBP16.45■□□□□ 0.22
VPS39-210ENST00000568357 HSP90AA2PQ14568 343 aaPredicted RBP16.45■□□□□ 0.22
VPS39-210ENST00000568357 SMAD2Q15796 467 aaKnown RBP16.45■□□□□ 0.22
VPS39-210ENST00000568357 E2F4Q16254 413 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 KIAA0319Q5VV43 1072 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 ANKRD54Q6NXT1 300 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 ZNF720Q7Z2F6 126 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 SFR1Q86XK3 245 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 SMRP1Q8NCR6 262 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 STAMQ92783 540 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 B3GALT6Q96L58 329 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 ZMAT2Q96NC0 199 aaKnown RBP16.45■□□□□ 0.22
VPS39-210ENST00000568357 ACAP3Q96P50 834 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 KLHL5Q96PQ7 755 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 STK39Q9UEW8 545 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 CFAP45Q9UL16 551 aa16.45■□□□□ 0.22
VPS39-210ENST00000568357 FSD2A1L4K1 749 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 C2CD2LO14523 706 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 TADA2AO75478 443 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 CNPP09543 421 aaKnown RBP16.44■□□□□ 0.22
VPS39-210ENST00000568357 SCP2P22307 547 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 YARSP54577 528 aaKnown RBP16.44■□□□□ 0.22
VPS39-210ENST00000568357 NOLC1Q14978 699 aaKnown RBP eCLIP16.44■□□□□ 0.22
VPS39-210ENST00000568357 SLC10A6Q3KNW5 377 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 FUT10Q6P4F1 479 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 SYCE2Q6PIF2 218 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 KCNG4Q8TDN1 519 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 SLC22A17Q8WUG5 538 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 BICD1Q96G01 975 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 HERC2P3Q9BVR0 1158 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 S1PR5Q9H228 398 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 MRPL17Q9NRX2 175 aaKnown RBP16.44■□□□□ 0.22
VPS39-210ENST00000568357 CHST7Q9NS84 486 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 ADAM28Q9UKQ2 775 aa16.44■□□□□ 0.22
VPS39-210ENST00000568357 TECTAO75443 2155 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 C19orf67A6NJJ6 358 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 KIF4AO95239 1232 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 PIGRP01833 764 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 EPCAMP16422 314 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 ME1P48163 572 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 LIG4P49917 911 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 DSG1Q02413 1049 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 SOX4Q06945 474 aaPredicted RBP16.43■□□□□ 0.22
VPS39-210ENST00000568357 SLC39A4Q6P5W5 647 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 CD300LGQ6UXG3 332 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 TMEM87AQ8NBN3 555 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 HASPINQ8TF76 798 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 APOL5Q9BWW9 433 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 STRA6Q9BX79 667 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 IKZF4Q9H2S9 585 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 ST6GALNAC4Q9H4F1 302 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 GOLGA2P5Q9HBQ8 144 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 TOPORSQ9NS56 1045 aaPredicted RBP16.43■□□□□ 0.22
VPS39-210ENST00000568357 TBC1D7Q9P0N9 293 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 FAM50BQ9Y247 325 aa16.43■□□□□ 0.22
VPS39-210ENST00000568357 FRMD3A2A2Y4 597 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 TISP43B9A030 160 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 ANKRD63C9JTQ0 380 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 HNRNPDLO14979 420 aaKnown RBP16.42■□□□□ 0.22
VPS39-210ENST00000568357 URODP06132 367 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 KCNE1P15382 129 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 MATR3P43243 847 aaKnown RBP eCLIP16.42■□□□□ 0.22
VPS39-210ENST00000568357 GLUD2P49448 558 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 CLCNKBP51801 687 aa16.42■□□□□ 0.22
VPS39-210ENST00000568357 ZBTB41Q5SVQ8 909 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms