RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 TDHQ8IZJ6 230 aa13.73□□□□□ -0.21
SF3B3-206ENST00000565990 ENOX1Q8TC92 643 aaKnown RBP13.73□□□□□ -0.21
SF3B3-206ENST00000565990 LPPQ93052 612 aa13.73□□□□□ -0.21
SF3B3-206ENST00000565990 MFSD14AQ96MC6 490 aa13.73□□□□□ -0.21
SF3B3-206ENST00000565990 CASD1Q96PB1 797 aa13.73□□□□□ -0.21
SF3B3-206ENST00000565990 CCDC94Q9BW85 323 aaPredicted RBP13.73□□□□□ -0.21
SF3B3-206ENST00000565990 LRFN2Q9ULH4 789 aa13.73□□□□□ -0.21
SF3B3-206ENST00000565990 LAMA2P24043 3122 aaKnown RBP13.73□□□□□ -0.21
SF3B3-206ENST00000565990 A0A1W2PPC1 479 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 TRIM49BA6NDI0 452 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 ARL5CA6NH57 179 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 ZNF233A6NK53 670 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 ZBBXA8MT70 800 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 ATP2A2P16615 1042 aaKnown RBP13.72□□□□□ -0.21
SF3B3-206ENST00000565990 MATR3P43243 847 aaKnown RBP eCLIP13.72□□□□□ -0.21
SF3B3-206ENST00000565990 AFF1P51825 1210 aaKnown RBP13.72□□□□□ -0.21
SF3B3-206ENST00000565990 ENPEPQ07075 957 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 ZBTB6Q15916 424 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 ENOX2Q16206 610 aaKnown RBP13.72□□□□□ -0.21
SF3B3-206ENST00000565990 SEZ6Q53EL9 994 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 LRRC55Q6ZSA7 311 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 TMCO2Q7Z6W1 182 aaPredicted RBP13.72□□□□□ -0.21
SF3B3-206ENST00000565990 BORCS6Q96GS4 357 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 MRFAP1L1Q96HT8 127 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 RNPC3Q96LT9 517 aaKnown RBP13.72□□□□□ -0.21
SF3B3-206ENST00000565990 CEP63Q96MT8 703 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 RAD9AQ99638 391 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 TSG101Q99816 390 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 BPIFA3Q9BQP9 254 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 FAM213AQ9BRX8 229 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 MKNK1Q9BUB5 465 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 CXCL16Q9H2A7 254 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 RSAD1Q9HA92 442 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 CBX8Q9HC52 389 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 MIOSQ9NXC5 875 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 KANSL3Q9P2N6 904 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 INSL6Q9Y581 213 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 RALGAPA2Q2PPJ7 1873 aa13.72□□□□□ -0.21
SF3B3-206ENST00000565990 RANBP2P49792 3224 aaKnown RBP13.71□□□□□ -0.21
SF3B3-206ENST00000565990 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.71□□□□□ -0.21
SF3B3-206ENST00000565990 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.71□□□□□ -0.21
SF3B3-206ENST00000565990 CETN3O15182 167 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 EXOC3O60645 756 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 AKAP3O75969 853 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 RECQL4O94761 1208 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 UPP2O95045 317 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 FGFR1P11362 822 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 KCNE1P15382 129 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 NR2F2P24468 414 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 CASP4P49662 377 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 OSTNP61366 133 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 CLDN10P78369 228 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 SNRNP35Q16560 246 aaKnown RBP13.71□□□□□ -0.21
SF3B3-206ENST00000565990 KLHL10Q6JEL2 608 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 CHRDL2Q6WN34 429 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 FILIP1Q7Z7B0 1213 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 CBWD2Q8IUF1 395 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 SP7Q8TDD2 431 aaPredicted RBP13.71□□□□□ -0.21
SF3B3-206ENST00000565990 SAAL1Q96ER3 474 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 GAD1Q99259 594 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 NAT10Q9H0A0 1025 aaKnown RBP13.71□□□□□ -0.21
SF3B3-206ENST00000565990 TMEM117Q9H0C3 514 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 ASB7Q9H672 318 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 RPF1Q9H9Y2 349 aaKnown RBP13.71□□□□□ -0.21
SF3B3-206ENST00000565990 TOPORSQ9NS56 1045 aaPredicted RBP13.71□□□□□ -0.21
SF3B3-206ENST00000565990 CNTN3Q9P232 1028 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 PARP2Q9UGN5 583 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 CTNND2Q9UQB3 1225 aa13.71□□□□□ -0.21
SF3B3-206ENST00000565990 SMIM28A0A1B0GU29 152 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 GOLGA8IPA6NC78 632 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 GOLGA8JA6NMD2 632 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 LACTBL1A8MY62 500 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 PTGESO14684 152 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 CXCL8P10145 99 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 HARSP12081 509 aaKnown RBP13.7□□□□□ -0.22
SF3B3-206ENST00000565990 PSMC2P35998 433 aaKnown RBP13.7□□□□□ -0.22
SF3B3-206ENST00000565990 ZNF165P49910 485 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 CYP2J2P51589 502 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 ZNF75DP51815 510 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 YARSP54577 528 aaKnown RBP13.7□□□□□ -0.22
SF3B3-206ENST00000565990 STX17P56962 302 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 SYCP1Q15431 976 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 NAB2Q15742 525 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 ANO6Q4KMQ2 910 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 PRPF38BQ5VTL8 546 aaKnown RBP13.7□□□□□ -0.22
SF3B3-206ENST00000565990 SPATA1Q5VX52 437 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 GLB1LQ6UWU2 654 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 C11orf57Q6ZUT1 292 aaPredicted RBP13.7□□□□□ -0.22
SF3B3-206ENST00000565990 BRSK2Q8IWQ3 736 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 CMTR2Q8IYT2 770 aaKnown RBP13.7□□□□□ -0.22
SF3B3-206ENST00000565990 RDH13Q8NBN7 331 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 RNF169Q8NCN4 708 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 HELQQ8TDG4 1101 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 SNX27Q96L92 541 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 ZFP42Q96MM3 310 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 ZMAT2Q96NC0 199 aaKnown RBP13.7□□□□□ -0.22
SF3B3-206ENST00000565990 SRRTQ9BXP5 876 aaKnown RBP13.7□□□□□ -0.22
SF3B3-206ENST00000565990 KLK14Q9P0G3 267 aa13.7□□□□□ -0.22
SF3B3-206ENST00000565990 COLQQ9Y215 455 aaPredicted RBP13.7□□□□□ -0.22
SF3B3-206ENST00000565990 FRMD4BQ9Y2L6 1034 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms