RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 GLB1LQ6UWU2 654 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 KRBA2Q6ZNG9 492 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 UNC13DQ70J99 1090 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 TAS1R3Q7RTX0 852 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 TMEM87AQ8NBN3 555 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 HELQQ8TDG4 1101 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 ACO2Q99798 780 aaKnown RBP18.88■□□□□ 0.61
CLN3-217ENST00000565354 TMEM117Q9H0C3 514 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 UBN1Q9NPG3 1134 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 TNFSF13BQ9Y275 285 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 PCDHB13Q9Y5F0 798 aa18.88■□□□□ 0.61
CLN3-217ENST00000565354 FRMD3A2A2Y4 597 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 TTLL13PA6NNM8 815 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 EDN1P05305 212 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 MYL1P05976 194 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 HARSP12081 509 aaKnown RBP18.87■□□□□ 0.61
CLN3-217ENST00000565354 NUBP1P53384 320 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 FOXK2Q01167 660 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 ALCAMQ13740 583 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 EEF1DP3Q658K8 133 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 CNNM4Q6P4Q7 775 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 ZNF720Q7Z2F6 126 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 ZNF598Q86UK7 904 aaKnown RBP18.87■□□□□ 0.61
CLN3-217ENST00000565354 URGCPQ8TCY9 931 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 HVCN1Q96D96 273 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 VPS13AQ96RL7 3174 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 RSAD1Q9HA92 442 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 AAASQ9NRG9 546 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 OLFML3Q9NRN5 406 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 EXOC1Q9NV70 894 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 ANKFY1Q9P2R3 1169 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 PARP2Q9UGN5 583 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 HOOK1Q9UJC3 728 aaKnown RBP18.87■□□□□ 0.61
CLN3-217ENST00000565354 EXOC7Q9UPT5 735 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 INPP5FQ9Y2H2 1132 aa18.87■□□□□ 0.61
CLN3-217ENST00000565354 PVALEFA0A1B0GWK0 134 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 HNRNPDLO14979 420 aaKnown RBP18.86■□□□□ 0.61
CLN3-217ENST00000565354 KINO60870 393 aaKnown RBP18.86■□□□□ 0.61
CLN3-217ENST00000565354 GADD45BO75293 160 aaPredicted RBP18.86■□□□□ 0.61
CLN3-217ENST00000565354 PRPF40AO75400 957 aaKnown RBP18.86■□□□□ 0.61
CLN3-217ENST00000565354 FGF18O76093 207 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 SRGAP2BP0DMP2 458 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 ERVFC1P60507 584 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 UBE2HP62256 183 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 GTF2BQ00403 316 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 ZC2HC1CQ53FD0 456 aaPredicted RBP18.86■□□□□ 0.61
CLN3-217ENST00000565354 PDE12Q6L8Q7 609 aaKnown RBP18.86■□□□□ 0.61
CLN3-217ENST00000565354 MPZL3Q6UWV2 235 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 ZPBP2Q6X784 338 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 TMEM184AQ6ZMB5 413 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 MRPL10Q7Z7H8 261 aaKnown RBP18.86■□□□□ 0.61
CLN3-217ENST00000565354 ZBTB33Q86T24 672 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 FMR1NBQ8N0W7 255 aaPredicted RBP18.86■□□□□ 0.61
CLN3-217ENST00000565354 SMG8Q8ND04 991 aaKnown RBP18.86■□□□□ 0.61
CLN3-217ENST00000565354 FIZ1Q96SL8 496 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 MRPL9Q9BYD2 267 aaKnown RBP18.86■□□□□ 0.61
CLN3-217ENST00000565354 S1PR5Q9H228 398 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 NXF3Q9H4D5 531 aaKnown RBP18.86■□□□□ 0.61
CLN3-217ENST00000565354 ST6GALNAC4Q9H4F1 302 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 HES2Q9Y543 173 aa18.86■□□□□ 0.61
CLN3-217ENST00000565354 PROB1E7EW31 1015 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 H0Y858 1186 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 GOLGA6L22H0YM25 854 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 TOM1L1O75674 476 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 PDGFBP01127 241 aaPredicted RBP18.85■□□□□ 0.61
CLN3-217ENST00000565354 KCNC3Q14003 757 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 FAM26FQ5R3K3 315 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 MAP4K3Q8IVH8 894 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 SYCP3Q8IZU3 236 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 LRRC43Q8N309 656 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 RSPH1Q8WYR4 309 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 RIPOR3Q96MK2 946 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 ACCSQ96QU6 501 aa18.85■□□□□ 0.61
CLN3-217ENST00000565354 MEIS3P2A8K0S8 358 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 FSCN2O14926 492 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 CLDN3O15551 220 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 MYBP10242 640 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 MCF2P10911 925 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 AKAP5P24588 427 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 RNASELQ05823 741 aaKnown RBP18.84■□□□□ 0.61
CLN3-217ENST00000565354 NOLC1Q14978 699 aaKnown RBP eCLIP18.84■□□□□ 0.61
CLN3-217ENST00000565354 NOMO2Q5JPE7 1267 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 CLLU1OSQ5K130 101 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 L1TD1Q5T7N2 865 aaKnown RBP18.84■□□□□ 0.61
CLN3-217ENST00000565354 ANKRD54Q6NXT1 300 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 AGMOQ6ZNB7 445 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 THNSL1Q8IYQ7 743 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 COLGALT1Q8NBJ5 622 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 KCNN1Q92952 543 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 HPS3Q969F9 1004 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 CASD1Q96PB1 797 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 RPS6KC1Q96S38 1066 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 CCDC94Q9BW85 323 aaPredicted RBP18.84■□□□□ 0.61
CLN3-217ENST00000565354 CDT1Q9H211 546 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 RNF19AQ9NV58 838 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 SNTG2Q9NY99 539 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 GDAQ9Y2T3 454 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 GIT1Q9Y2X7 761 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 WDR87Q6ZQQ6 2873 aa18.84■□□□□ 0.61
CLN3-217ENST00000565354 GALR2O43603 387 aaPredicted RBP18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms