RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 CXCL8P10145 99 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 AKAP5P24588 427 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 EEF1GP26641 437 aaKnown RBP22.41■■□□□ 1.18
CLN3-212ENST00000564574 PPP2R3AQ06190 1150 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 PSMD6Q15008 389 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 SLC10A6Q3KNW5 377 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.41■■□□□ 1.18
CLN3-212ENST00000564574 AGMOQ6ZNB7 445 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 LUZP1Q86V48 1076 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 CRIPAKQ8N1N5 446 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 TMC2Q8TDI7 906 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 EEF2KMTQ96G04 330 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 SNX27Q96L92 541 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 CNOT6LQ96LI5 555 aaKnown RBP22.41■■□□□ 1.18
CLN3-212ENST00000564574 RNF39Q9H2S5 420 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 SAMSN1Q9NSI8 373 aaKnown RBP22.41■■□□□ 1.18
CLN3-212ENST00000564574 PCDH10Q9P2E7 1040 aa22.41■■□□□ 1.18
CLN3-212ENST00000564574 ARMCX3Q9UH62 379 aaPredicted RBP22.41■■□□□ 1.18
CLN3-212ENST00000564574 TDRD15B5MCY1 1934 aaKnown RBP22.41■■□□□ 1.18
CLN3-212ENST00000564574 TTC26A0AVF1 554 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 ZBBXA8MT70 800 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 BFSP1Q12934 665 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 XKR4Q5GH76 650 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 HABP4Q5JVS0 413 aaKnown RBP22.4■■□□□ 1.18
CLN3-212ENST00000564574 ALKAL1Q6UXT8 129 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 NT5DC4Q86YG4 428 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 IRF2BP1Q8IU81 584 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 RNF169Q8NCN4 708 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 LPPQ93052 612 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 TOP1MTQ969P6 601 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 BORCS6Q96GS4 357 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 CNTN3Q9P232 1028 aa22.4■■□□□ 1.18
CLN3-212ENST00000564574 FNDC1Q4ZHG4 1894 aaPredicted RBP22.4■■□□□ 1.18
CLN3-212ENST00000564574 KCNJ18B7U540 433 aa22.39■■□□□ 1.17
CLN3-212ENST00000564574 INPPL1O15357 1258 aa22.39■■□□□ 1.17
CLN3-212ENST00000564574 ZNF18P17022 549 aa22.39■■□□□ 1.17
CLN3-212ENST00000564574 KCNJ12Q14500 433 aa22.39■■□□□ 1.17
CLN3-212ENST00000564574 ANKRD20A12PQ8NF67 263 aa22.39■■□□□ 1.17
CLN3-212ENST00000564574 PARD3BQ8TEW8 1205 aa22.39■■□□□ 1.17
CLN3-212ENST00000564574 FNBP1Q96RU3 617 aa22.39■■□□□ 1.17
CLN3-212ENST00000564574 RPS6KC1Q96S38 1066 aa22.39■■□□□ 1.17
CLN3-212ENST00000564574 DERAQ9Y315 318 aa22.39■■□□□ 1.17
CLN3-212ENST00000564574 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.39■■□□□ 1.17
CLN3-212ENST00000564574 LACTBL1A8MY62 500 aa22.38■■□□□ 1.17
CLN3-212ENST00000564574 IBSPP21815 317 aaPredicted RBP22.38■■□□□ 1.17
CLN3-212ENST00000564574 VAMP7P51809 220 aa22.38■■□□□ 1.17
CLN3-212ENST00000564574 RASIP1Q5U651 963 aa22.38■■□□□ 1.17
CLN3-212ENST00000564574 GLB1LQ6UWU2 654 aa22.38■■□□□ 1.17
CLN3-212ENST00000564574 GAS2L3Q86XJ1 694 aa22.38■■□□□ 1.17
CLN3-212ENST00000564574 PHOSPHO2Q8TCD6 241 aa22.38■■□□□ 1.17
CLN3-212ENST00000564574 FAM212AQ96EL1 285 aa22.38■■□□□ 1.17
CLN3-212ENST00000564574 SLC9A7Q96T83 725 aa22.38■■□□□ 1.17
CLN3-212ENST00000564574 CGRRF1Q99675 332 aa22.38■■□□□ 1.17
CLN3-212ENST00000564574 GDF15Q99988 308 aa22.38■■□□□ 1.17
CLN3-212ENST00000564574 HSD3B7Q9H2F3 369 aa22.38■■□□□ 1.17
CLN3-212ENST00000564574 MEIS3P2A8K0S8 358 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 H0YGN5 161 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 MEFVO15553 781 aaPredicted RBP22.37■■□□□ 1.17
CLN3-212ENST00000564574 STX10O60499 249 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 OFD1O75665 1012 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 KCNE1P15382 129 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 CDK11BP21127 795 aaKnown RBP22.37■■□□□ 1.17
CLN3-212ENST00000564574 MTIF2P46199 727 aaKnown RBP22.37■■□□□ 1.17
CLN3-212ENST00000564574 DEFB103AP81534 67 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 TCP11X2Q5H9J9 407 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 WDR49Q8IV35 697 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 TRIM59Q8IWR1 403 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 ABI1Q8IZP0 508 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 RNF214Q8ND24 703 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 URGCPQ8TCY9 931 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 PDE11AQ9HCR9 933 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 RNF19AQ9NV58 838 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 KLK14Q9P0G3 267 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 C2CD2Q9Y426 696 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 SLC4A7Q9Y6M7 1214 aa22.37■■□□□ 1.17
CLN3-212ENST00000564574 ARL5CA6NH57 179 aa22.36■■□□□ 1.17
CLN3-212ENST00000564574 XPOTO43592 962 aaKnown RBP22.36■■□□□ 1.17
CLN3-212ENST00000564574 MLH1P40692 756 aa22.36■■□□□ 1.17
CLN3-212ENST00000564574 AP3M2P53677 418 aa22.36■■□□□ 1.17
CLN3-212ENST00000564574 CLDN10P78369 228 aa22.36■■□□□ 1.17
CLN3-212ENST00000564574 CLLU1OSQ5K130 101 aa22.36■■□□□ 1.17
CLN3-212ENST00000564574 HELQQ8TDG4 1101 aa22.36■■□□□ 1.17
CLN3-212ENST00000564574 CCDC127Q96BQ5 260 aa22.36■■□□□ 1.17
CLN3-212ENST00000564574 GAD1Q99259 594 aa22.36■■□□□ 1.17
CLN3-212ENST00000564574 TMEM117Q9H0C3 514 aa22.36■■□□□ 1.17
CLN3-212ENST00000564574 RBSNQ9H1K0 784 aa22.36■■□□□ 1.17
CLN3-212ENST00000564574 KANSL3Q9P2N6 904 aa22.36■■□□□ 1.17
CLN3-212ENST00000564574 LRRIQ3A6PVS8 624 aaPredicted RBP22.35■■□□□ 1.17
CLN3-212ENST00000564574 FGFR1P11362 822 aa22.35■■□□□ 1.17
CLN3-212ENST00000564574 PRKCSHP14314 528 aaPredicted RBP22.35■■□□□ 1.17
CLN3-212ENST00000564574 MAN2A1Q16706 1144 aa22.35■■□□□ 1.17
CLN3-212ENST00000564574 HSP90AA4PQ58FG1 418 aa22.35■■□□□ 1.17
CLN3-212ENST00000564574 TCERG1LQ5VWI1 586 aa22.35■■□□□ 1.17
CLN3-212ENST00000564574 CREBRFQ8IUR6 639 aa22.35■■□□□ 1.17
CLN3-212ENST00000564574 PLEKHO2Q8TD55 490 aa22.35■■□□□ 1.17
CLN3-212ENST00000564574 CACTINQ8WUQ7 758 aaKnown RBP22.35■■□□□ 1.17
CLN3-212ENST00000564574 MRPL9Q9BYD2 267 aaKnown RBP22.35■■□□□ 1.17
CLN3-212ENST00000564574 UBE2OQ9C0C9 1292 aaKnown RBP22.35■■□□□ 1.17
CLN3-212ENST00000564574 SLC38A7Q9NVC3 462 aa22.35■■□□□ 1.17
CLN3-212ENST00000564574 CXXC1Q9P0U4 656 aaPredicted RBP22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms