RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 SIX2Q9NPC8 291 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 FAM207AQ9NSI2 230 aaPredicted RBP11.02□□□□□ -0.65
SMG1-208ENST00000563448 GCNT4Q9P109 453 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 SCN1AP35498 2009 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 MICAL3Q7RTP6 2002 aa11.02□□□□□ -0.65
SMG1-208ENST00000563448 MROH7Q68CQ1 1323 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 AKR1B15C9JRZ8 316 aaPredicted RBP11.01□□□□□ -0.65
SMG1-208ENST00000563448 GPR182O15218 404 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 PQBP1O60828 265 aaKnown RBP11.01□□□□□ -0.65
SMG1-208ENST00000563448 LRRN2O75325 713 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 C4BPAP04003 597 aaKnown RBP11.01□□□□□ -0.65
SMG1-208ENST00000563448 TNNI1P19237 187 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 TRIM21P19474 475 aaKnown RBP11.01□□□□□ -0.65
SMG1-208ENST00000563448 POU5F1Q01860 360 aaKnown RBP11.01□□□□□ -0.65
SMG1-208ENST00000563448 MBTPS1Q14703 1052 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 SURF1Q15526 300 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 KYAT1Q16773 422 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 SLC10A6Q3KNW5 377 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 KRT39Q6A163 491 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 SV2AQ7L0J3 742 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 ANKRD33Q7Z3H0 272 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 LRRC8AQ8IWT6 810 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 EHBP1Q8NDI1 1231 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 CAGE1Q8TC20 777 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 FAM212AQ96EL1 285 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 GANQ9H2C0 597 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 PLCB1Q9NQ66 1216 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 CHST12Q9NRB3 414 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 SNTG2Q9NY99 539 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 PADI3Q9ULW8 664 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 CAPN11Q9UMQ6 739 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 SQORQ9Y6N5 450 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 A0A1W2PQJ5 194 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 LACTBL1A8MY62 500 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 TLR3O15455 904 aaKnown RBP11.01□□□□□ -0.65
SMG1-208ENST00000563448 MFAP3LO75121 409 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 LRMPQ12912 555 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 C1orf53Q5VUE5 145 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 TRIM65Q6PJ69 517 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 APBB1IPQ7Z5R6 666 aaPredicted RBP11.01□□□□□ -0.65
SMG1-208ENST00000563448 WDR49Q8IV35 697 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 EFCAB13Q8IY85 973 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 CCDC150Q8NCX0 1101 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 OR5B17Q8NGF7 314 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 SEMA4DQ92854 862 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 TRIM44Q96DX7 344 aaPredicted RBP11.01□□□□□ -0.65
SMG1-208ENST00000563448 CCDC51Q96ER9 411 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 PAWRQ96IZ0 340 aaKnown RBP11.01□□□□□ -0.65
SMG1-208ENST00000563448 ACAP3Q96P50 834 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 INTS2Q9H0H0 1204 aaKnown RBP11.01□□□□□ -0.65
SMG1-208ENST00000563448 TMX1Q9H3N1 280 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 NXF3Q9H4D5 531 aaKnown RBP11.01□□□□□ -0.65
SMG1-208ENST00000563448 COQ4Q9Y3A0 265 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 HES2Q9Y543 173 aa11.01□□□□□ -0.65
SMG1-208ENST00000563448 IL18RAPO95256 599 aa11□□□□□ -0.65
SMG1-208ENST00000563448 SELPP16109 830 aa11□□□□□ -0.65
SMG1-208ENST00000563448 FAAP100Q0VG06 881 aa11□□□□□ -0.65
SMG1-208ENST00000563448 PAK2Q13177 524 aa11□□□□□ -0.65
SMG1-208ENST00000563448 BFSP2Q13515 415 aa11□□□□□ -0.65
SMG1-208ENST00000563448 DSC3Q14574 896 aa11□□□□□ -0.65
SMG1-208ENST00000563448 ZACNQ401N2 412 aa11□□□□□ -0.65
SMG1-208ENST00000563448 TRIM60Q495X7 471 aa11□□□□□ -0.65
SMG1-208ENST00000563448 HS1BP3Q53T59 392 aa11□□□□□ -0.65
SMG1-208ENST00000563448 KLHDC7AQ5VTJ3 777 aa11□□□□□ -0.65
SMG1-208ENST00000563448 TDRD10Q5VZ19 366 aaKnown RBP11□□□□□ -0.65
SMG1-208ENST00000563448 TWF2Q6IBS0 349 aaKnown RBP11□□□□□ -0.65
SMG1-208ENST00000563448 LRRC8DQ7L1W4 858 aa11□□□□□ -0.65
SMG1-208ENST00000563448 SMG8Q8ND04 991 aaKnown RBP11□□□□□ -0.65
SMG1-208ENST00000563448 TAS1R2Q8TE23 839 aa11□□□□□ -0.65
SMG1-208ENST00000563448 IQCDQ96DY2 449 aa11□□□□□ -0.65
SMG1-208ENST00000563448 TMEM106CQ9BVX2 250 aa11□□□□□ -0.65
SMG1-208ENST00000563448 CCDC94Q9BW85 323 aaPredicted RBP11□□□□□ -0.65
SMG1-208ENST00000563448 TRIM6Q9C030 488 aaPredicted RBP11□□□□□ -0.65
SMG1-208ENST00000563448 CXCL16Q9H2A7 254 aa11□□□□□ -0.65
SMG1-208ENST00000563448 C11orf49Q9H6J7 331 aa11□□□□□ -0.65
SMG1-208ENST00000563448 IPPQ9Y573 584 aa11□□□□□ -0.65
SMG1-208ENST00000563448 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11□□□□□ -0.65
SMG1-208ENST00000563448 UMODL1Q5DID0 1318 aa11□□□□□ -0.65
SMG1-208ENST00000563448 MGEA5O60502 916 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 VNN1O95497 513 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 TPM1P09493 284 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 KRT9P35527 623 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 TLE2Q04725 743 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 CETN1Q12798 172 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 SCARA3Q6AZY7 606 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 GJB7Q6PEY0 223 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 CNGA4Q8IV77 575 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 USP38Q8NB14 1042 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 FBXL13Q8NEE6 735 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 BAP1Q92560 729 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 TOX2Q96NM4 488 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 EDEM3Q9BZQ6 932 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 RNF39Q9H2S5 420 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 ASB7Q9H672 318 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 CEP72Q9P209 647 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 AJAP1Q9UKB5 411 aaPredicted RBP10.99□□□□□ -0.65
SMG1-208ENST00000563448 LUC7L2Q9Y383 392 aaKnown RBP10.99□□□□□ -0.65
SMG1-208ENST00000563448 DCDC2CA8MYV0 355 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 NFICP08651 508 aa10.99□□□□□ -0.65
SMG1-208ENST00000563448 ZSCAN20P17040 1043 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms