RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 RPF1Q9H9Y2 349 aaKnown RBP8.09□□□□□ -1.11
VPS39-204ENST00000561818 MRPL47Q9HD33 250 aaKnown RBP8.09□□□□□ -1.11
VPS39-204ENST00000561818 TOPORSQ9NS56 1045 aaPredicted RBP8.09□□□□□ -1.11
VPS39-204ENST00000561818 GTF3C4Q9UKN8 822 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.09□□□□□ -1.11
VPS39-204ENST00000561818 SCINQ9Y6U3 715 aa8.09□□□□□ -1.11
VPS39-204ENST00000561818 GOLGB1Q14789 3259 aaKnown RBP8.09□□□□□ -1.11
VPS39-204ENST00000561818 ADGRA3Q8IWK6 1321 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 SMIM35A0A1B0GVV1 85 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 A6NJR5 290 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 INO80B-WBP1J3KQ70 363 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 C22orf31O95567 290 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 F2P00734 622 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 GNRH1P01148 92 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 MMP3P08254 477 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 DLATP10515 647 aaKnown RBP8.08□□□□□ -1.12
VPS39-204ENST00000561818 AKR1A1P14550 325 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 ATF7P17544 494 aaPredicted RBP8.08□□□□□ -1.12
VPS39-204ENST00000561818 PROZP22891 400 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 POLR2BP30876 1174 aaKnown RBP8.08□□□□□ -1.12
VPS39-204ENST00000561818 CETN2P41208 172 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 NOP2P46087 812 aaKnown RBP8.08□□□□□ -1.12
VPS39-204ENST00000561818 FCGRTP55899 365 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 CYP27A1Q02318 531 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 ARID5AQ03989 594 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 PPP3CAQ08209 521 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 PTPN21Q16825 1174 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 ZNF568Q3ZCX4 644 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 MORN1Q5T089 497 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 MFSD14CQ5VZR4 134 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 DPY19L2P1Q6NXN4 242 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 MOB2Q70IA6 237 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 EEPD1Q7L9B9 569 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 ZNF571Q7Z3V5 609 aaPredicted RBP8.08□□□□□ -1.12
VPS39-204ENST00000561818 PEX26Q7Z412 305 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 RDH13Q8NBN7 331 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 SMC1BQ8NDV3 1235 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 SLC30A5Q8TAD4 765 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 ASAP3Q8TDY4 903 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 EPS8L1Q8TE68 723 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 CCDC127Q96BQ5 260 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 NCAPGQ9BPX3 1015 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 NIF3L1Q9GZT8 377 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 CARD9Q9H257 536 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 VRTNQ9H8Y1 702 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 SUGCTQ9HAC7 445 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 CYP3A43Q9HB55 503 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 RRAGCQ9HB90 399 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 AVENQ9NQS1 362 aaPredicted RBP8.08□□□□□ -1.12
VPS39-204ENST00000561818 ANKFY1Q9P2R3 1169 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 AMFRQ9UKV5 643 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 STRIP2Q9ULQ0 834 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 TTC7AQ9ULT0 858 aaPredicted RBP8.08□□□□□ -1.12
VPS39-204ENST00000561818 NENFQ9UMX5 172 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 CNTN6Q9UQ52 1028 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 C2CD2Q9Y426 696 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 PLXNA1Q9UIW2 1896 aa8.08□□□□□ -1.12
VPS39-204ENST00000561818 CCDC66A2RUB6 948 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 ANKRD63C9JTQ0 380 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 M0QZ92 97 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 TNPO2O14787 897 aaKnown RBP8.07□□□□□ -1.12
VPS39-204ENST00000561818 ZNF263O14978 683 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 THAP12O43422 761 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 ARIH2O95376 493 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 C4BPAP04003 597 aaKnown RBP8.07□□□□□ -1.12
VPS39-204ENST00000561818 ADRB2P07550 413 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 ACTN1P12814 892 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 H2AFXP16104 143 aaPredicted RBP8.07□□□□□ -1.12
VPS39-204ENST00000561818 HOXD10P28358 340 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 MAN1A1P33908 653 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 NSFP46459 744 aaKnown RBP8.07□□□□□ -1.12
VPS39-204ENST00000561818 YARSP54577 528 aaKnown RBP8.07□□□□□ -1.12
VPS39-204ENST00000561818 NOP14P78316 857 aaKnown RBP8.07□□□□□ -1.12
VPS39-204ENST00000561818 MAP2K1Q02750 393 aaPredicted RBP8.07□□□□□ -1.12
VPS39-204ENST00000561818 NOGQ13253 232 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 CUL2Q13617 745 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 NCOA4Q13772 614 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 ELF2Q15723 593 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 TEX35Q5T0J7 233 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 MEI1Q5TIA1 1274 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 PHLDB3Q6NSJ2 640 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 SLC39A4Q6P5W5 647 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 NOTUMQ6P988 496 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 MAATS1Q7Z4T9 603 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 SLFN11Q7Z7L1 901 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 SAPCD2Q86UD0 394 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 IFNL1Q8IU54 200 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 RHPN2Q8IUC4 686 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 MMGT1Q8N4V1 131 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 METTL13Q8N6R0 699 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 LINC01465Q8N7H1 131 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 ACTRT1Q8TDG2 376 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 HELQQ8TDG4 1101 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 SAAL1Q96ER3 474 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 NLRP4Q96MN2 994 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 SCLT1Q96NL6 688 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 OSBPL9Q96SU4 736 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 SYT11Q9BT88 431 aa8.07□□□□□ -1.12
VPS39-204ENST00000561818 CCDC94Q9BW85 323 aaPredicted RBP8.07□□□□□ -1.12
VPS39-204ENST00000561818 TARS2Q9BW92 718 aaKnown RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms