RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 TARS2Q9BW92 718 aaKnown RBP11.3□□□□□ -0.6
CLK3-205ENST00000561673 MRPL4Q9BYD3 311 aaKnown RBP11.3□□□□□ -0.6
CLK3-205ENST00000561673 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLK3-205ENST00000561673 FNIP2Q9P278 1114 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 LIMD1Q9UGP4 676 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 DPP7Q9UHL4 492 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 USTQ9Y2C2 406 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 SF3B1O75533 1304 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLK3-205ENST00000561673 PHLPP2Q6ZVD8 1323 aa11.3□□□□□ -0.6
CLK3-205ENST00000561673 SMIM28A0A1B0GU29 152 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 TGM5O43548 720 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 RFPL2O75678 378 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 C1RP00736 705 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 ASGR2P07307 311 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 PLS3P13797 630 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 PROZP22891 400 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 GRM5P41594 1212 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 OSTNP61366 133 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 GRIN1Q05586 938 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 GLRA4Q5JXX5 417 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 FAM171A1Q5VUB5 890 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 LILRA6Q6PI73 481 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 PRSS55Q6UWB4 352 aaPredicted RBP11.29□□□□□ -0.6
CLK3-205ENST00000561673 C15orf39Q6ZRI6 1047 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 BRAPQ7Z569 592 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 ZBTB33Q86T24 672 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 CEP57Q86XR8 500 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 GLYCTKQ8IVS8 523 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 ZDHHC14Q8IZN3 488 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 CEP120Q8N960 986 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 TDRD5Q8NAT2 981 aaKnown RBP11.29□□□□□ -0.6
CLK3-205ENST00000561673 TMEM161BQ8NDZ6 487 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 CMASQ8NFW8 434 aaPredicted RBP11.29□□□□□ -0.6
CLK3-205ENST00000561673 LRRC15Q8TF66 581 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 SPIRE2Q8WWL2 714 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 ZBTB45Q96K62 511 aaPredicted RBP11.29□□□□□ -0.6
CLK3-205ENST00000561673 AK8Q96MA6 479 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 TTPALQ9BTX7 342 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 CDT1Q9H211 546 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 KCND2Q9NZV8 630 aa11.29□□□□□ -0.6
CLK3-205ENST00000561673 VPS37CA5D8V6 355 aaPredicted RBP11.28□□□□□ -0.6
CLK3-205ENST00000561673 ABLIM1O14639 778 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 RIOK3O14730 519 aaKnown RBP11.28□□□□□ -0.6
CLK3-205ENST00000561673 BRD1O95696 1058 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 BMP15O95972 392 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 MAPTP10636 758 aaKnown RBP11.28□□□□□ -0.6
CLK3-205ENST00000561673 MCF2P10911 925 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 UBA7P41226 1012 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 CLCNKBP51801 687 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 SMTNP53814 917 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 YARSP54577 528 aaKnown RBP11.28□□□□□ -0.6
CLK3-205ENST00000561673 CREMQ03060 361 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 SF3A1Q15459 793 aaKnown RBP11.28□□□□□ -0.6
CLK3-205ENST00000561673 UPP1Q16831 310 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 ZNF568Q3ZCX4 644 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 XKR4Q5GH76 650 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 DCLRE1AQ6PJP8 1040 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 MPZL3Q6UWV2 235 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 CD300LGQ6UXG3 332 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 CCDC149Q6ZUS6 474 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 LNX1Q8TBB1 728 aaPredicted RBP11.28□□□□□ -0.6
CLK3-205ENST00000561673 HDAC7Q8WUI4 952 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 ZNF707Q96C28 371 aaPredicted RBP11.28□□□□□ -0.6
CLK3-205ENST00000561673 ACSF2Q96CM8 615 aaPredicted RBP11.28□□□□□ -0.6
CLK3-205ENST00000561673 ZMAT2Q96NC0 199 aaKnown RBP11.28□□□□□ -0.6
CLK3-205ENST00000561673 CLSTN3Q9BQT9 956 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 TCHPQ9BT92 498 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 CCDC94Q9BW85 323 aaPredicted RBP11.28□□□□□ -0.6
CLK3-205ENST00000561673 BACH2Q9BYV9 841 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 RHOBTB2Q9BYZ6 727 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 SMOC2Q9H3U7 446 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 PLEKHA4Q9H4M7 779 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 GOLGA2P5Q9HBQ8 144 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 KCNG1Q9UIX4 513 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 SORCS3Q9UPU3 1222 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 TECTAO75443 2155 aa11.28□□□□□ -0.6
CLK3-205ENST00000561673 TMEM189-UBE2V1I3L0A0 370 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 MEFVO15553 781 aaPredicted RBP11.27□□□□□ -0.61
CLK3-205ENST00000561673 ADAM12O43184 909 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 SLC26A4O43511 780 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 N4BP1O75113 896 aaKnown RBP11.27□□□□□ -0.61
CLK3-205ENST00000561673 B3GAT3O94766 335 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 PAPLNO95428 1278 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 PRR29P0C7W0 189 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 PDCP20941 246 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 LONP1P36776 959 aaKnown RBP11.27□□□□□ -0.61
CLK3-205ENST00000561673 SOX4Q06945 474 aaPredicted RBP11.27□□□□□ -0.61
CLK3-205ENST00000561673 ELAVL2Q12926 359 aaKnown RBP11.27□□□□□ -0.61
CLK3-205ENST00000561673 STRN3Q13033 797 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 MTMR3Q13615 1198 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 DHX8Q14562 1220 aaKnown RBP11.27□□□□□ -0.61
CLK3-205ENST00000561673 PSMD5Q16401 504 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 IER5LQ5T953 404 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 ELMSAN1Q6PJG2 1045 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 CYP26C1Q6V0L0 522 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 OTOP3Q7RTS5 596 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 UBALD2Q8IYN6 164 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 PIK3R5Q8WYR1 880 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 CALML4Q96GE6 196 aa11.27□□□□□ -0.61
CLK3-205ENST00000561673 UROC1Q96N76 676 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms