RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 HIP1RO75146 1068 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 ELAVL2Q12926 359 aaKnown RBP17.83■□□□□ 0.45
SNX1-213ENST00000561026 DMP1Q13316 513 aaPredicted RBP17.83■□□□□ 0.45
SNX1-213ENST00000561026 MCTP1Q6DN14 999 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 RINT1Q6NUQ1 792 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 C1orf186Q6ZWK4 172 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 KCNK18Q7Z418 384 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 LNX1Q8TBB1 728 aaPredicted RBP17.83■□□□□ 0.45
SNX1-213ENST00000561026 TMX3Q96JJ7 454 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 PHOX2BQ99453 314 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 CLSTN3Q9BQT9 956 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 RUSC1Q9BVN2 902 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 PRKD2Q9BZL6 878 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 TMEM134Q9H6X4 195 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 PIDD1Q9HB75 910 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 IGSF9Q9P2J2 1179 aa17.83■□□□□ 0.45
SNX1-213ENST00000561026 ZMYND10O75800 440 aa17.82■□□□□ 0.44
SNX1-213ENST00000561026 GBP2P32456 591 aaPredicted RBP17.82■□□□□ 0.44
SNX1-213ENST00000561026 ATP2C1P98194 919 aaPredicted RBP17.82■□□□□ 0.44
SNX1-213ENST00000561026 MAPK7Q13164 816 aa17.82■□□□□ 0.44
SNX1-213ENST00000561026 DRC1Q96MC2 740 aa17.82■□□□□ 0.44
SNX1-213ENST00000561026 PPP1R10Q96QC0 940 aaKnown RBP17.82■□□□□ 0.44
SNX1-213ENST00000561026 ACO2Q99798 780 aaKnown RBP17.82■□□□□ 0.44
SNX1-213ENST00000561026 C17orf75Q9HAS0 396 aa17.82■□□□□ 0.44
SNX1-213ENST00000561026 PTPRHQ9HD43 1115 aa17.82■□□□□ 0.44
SNX1-213ENST00000561026 ARHGAP28Q9P2N2 729 aa17.82■□□□□ 0.44
SNX1-213ENST00000561026 EPS15L1Q9UBC2 864 aa17.82■□□□□ 0.44
SNX1-213ENST00000561026 RBM19Q9Y4C8 960 aaKnown RBP17.82■□□□□ 0.44
SNX1-213ENST00000561026 PHLPP2Q6ZVD8 1323 aa17.82■□□□□ 0.44
SNX1-213ENST00000561026 TMEM189-UBE2V1I3L0A0 370 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 B3GAT3O94766 335 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 PSMD5Q16401 504 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 GLRA4Q5JXX5 417 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 ASTLQ6HA08 431 aaPredicted RBP17.81■□□□□ 0.44
SNX1-213ENST00000561026 PDXDC1Q6P996 788 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 DCLRE1AQ6PJP8 1040 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 TMEM105Q8N8V8 129 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 MYADMQ96S97 322 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 NTPCRQ9BSD7 190 aaKnown RBP17.81■□□□□ 0.44
SNX1-213ENST00000561026 MRPL4Q9BYD3 311 aaKnown RBP17.81■□□□□ 0.44
SNX1-213ENST00000561026 IRF2BPLQ9H1B7 796 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 KMT5AQ9NQR1 393 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.81■□□□□ 0.44
SNX1-213ENST00000561026 FBXW11Q9UKB1 542 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 DUSP12Q9UNI6 340 aa17.81■□□□□ 0.44
SNX1-213ENST00000561026 SMIM28A0A1B0GU29 152 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 CD2BP2O95400 341 aaKnown RBP17.8■□□□□ 0.44
SNX1-213ENST00000561026 FGFR3P22607 806 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 IGFBP6P24592 240 aaPredicted RBP17.8■□□□□ 0.44
SNX1-213ENST00000561026 GUCY2CP25092 1073 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 GRM5P41594 1212 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 CLCN5P51795 746 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 CLCNKBP51801 687 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 HYIQ5T013 277 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 ALKAL1Q6UXT8 129 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.8■□□□□ 0.44
SNX1-213ENST00000561026 TAS1R3Q7RTX0 852 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 KCTD17Q8N5Z5 321 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 CEP120Q8N960 986 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 UROC1Q96N76 676 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 TIPINQ9BVW5 301 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 CCDC94Q9BW85 323 aaPredicted RBP17.8■□□□□ 0.44
SNX1-213ENST00000561026 TARS2Q9BW92 718 aaKnown RBP17.8■□□□□ 0.44
SNX1-213ENST00000561026 CDT1Q9H211 546 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 MFSD1Q9H3U5 465 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 TOPORSQ9NS56 1045 aaPredicted RBP17.8■□□□□ 0.44
SNX1-213ENST00000561026 USP34Q70CQ2 3546 aa17.8■□□□□ 0.44
SNX1-213ENST00000561026 MTCL1Q9Y4B5 1905 aaKnown RBP17.8■□□□□ 0.44
SNX1-213ENST00000561026 SFI1A8K8P3 1242 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 ADAM12O43184 909 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 GALR2O43603 387 aaPredicted RBP17.79■□□□□ 0.44
SNX1-213ENST00000561026 GJB2P29033 226 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 YARSP54577 528 aaKnown RBP17.79■□□□□ 0.44
SNX1-213ENST00000561026 ZRSR1Q15695 479 aaKnown RBP17.79■□□□□ 0.44
SNX1-213ENST00000561026 UPP1Q16831 310 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 ZNF568Q3ZCX4 644 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 XKR4Q5GH76 650 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 CD300LGQ6UXG3 332 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 RSAD2Q8WXG1 361 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 NXPE3Q969Y0 559 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 PNMA5Q96PV4 448 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 H3BQV1 296 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 SLC16A4O15374 487 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 HNRNPA1P09651 372 aaKnown RBP eCLIP17.79■□□□□ 0.44
SNX1-213ENST00000561026 LAMP2P13473 410 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 PROZP22891 400 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 OSTNP61366 133 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 RAB33AQ14088 237 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 LIN9Q5TKA1 542 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 ARL6IP4Q66PJ3 421 aaKnown RBP17.79■□□□□ 0.44
SNX1-213ENST00000561026 SLC44A3Q8N4M1 653 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 SYT2Q8N9I0 419 aaPredicted RBP17.79■□□□□ 0.44
SNX1-213ENST00000561026 TCHPQ9BT92 498 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 GOLGA2P5Q9HBQ8 144 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 KCNG1Q9UIX4 513 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 FBXL21Q9UKT6 434 aa17.79■□□□□ 0.44
SNX1-213ENST00000561026 VWA3AA6NCI4 1184 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 H0Y858 1186 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 ABLIM1O14639 778 aa17.78■□□□□ 0.44
SNX1-213ENST00000561026 TRAPPC3O43617 180 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms