RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 KCNH6Q9H252 994 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 CHMP4BQ9H444 224 aaKnown RBP3.02□□□□□ -1.93
SPG11-223ENST00000560858 RRAGDQ9NQL2 400 aaPredicted RBP3.02□□□□□ -1.93
SPG11-223ENST00000560858 KCNH7Q9NS40 1196 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 IFT57Q9NWB7 429 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 SYBUQ9NX95 663 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 ANKFY1Q9P2R3 1169 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 NCDNQ9UBB6 729 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 TRAF6Q9Y4K3 522 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 SLIT1O75093 1534 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 FER1L4A9Z1Z3 1794 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 LMTK3Q96Q04 1460 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 SSH2Q76I76 1423 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 ADAMTS13Q76LX8 1427 aa3.02□□□□□ -1.93
SPG11-223ENST00000560858 ZNF142P52746 1687 aaPredicted RBP3.01□□□□□ -1.93
SPG11-223ENST00000560858 MSH6P52701 1360 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 TRAV20A0A0B4J274 112 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 GOLGA6L3A6NEY3 463 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 TMEM200CA6NKL6 621 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 GOLGA6L22H0YM25 854 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 ZNF561-AS1K7EIQ3 104 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 KCNK3O14649 394 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 EIF5BO60841 1220 aaKnown RBP3.01□□□□□ -1.93
SPG11-223ENST00000560858 ZFPL1O95159 310 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 XRCC6P12956 609 aaKnown RBP eCLIP3.01□□□□□ -1.93
SPG11-223ENST00000560858 ATF4P18848 351 aaPredicted RBP3.01□□□□□ -1.93
SPG11-223ENST00000560858 PRKAR2BP31323 418 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 SEC24CP53992 1094 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 RIPK4P57078 832 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 KRTAP10-6P60371 365 aaPredicted RBP3.01□□□□□ -1.93
SPG11-223ENST00000560858 GNAI1P63096 354 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 ADAM8P78325 824 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 BLOC1S1P78537 153 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 LACTBP83111 547 aaPredicted RBP3.01□□□□□ -1.93
SPG11-223ENST00000560858 LMOD3Q0VAK6 560 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 SPIDRQ14159 915 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 DGKDQ16760 1214 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 CXorf67Q86X51 503 aaPredicted RBP3.01□□□□□ -1.93
SPG11-223ENST00000560858 SRRM1Q8IYB3 904 aaKnown RBP3.01□□□□□ -1.93
SPG11-223ENST00000560858 CMTM4Q8IZR5 234 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 SLC9A6Q92581 669 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 PRAM1Q96QH2 718 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 POLKQ9UBT6 870 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 CBLCQ9ULV8 474 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 NOB1Q9ULX3 412 aaKnown RBP3.01□□□□□ -1.93
SPG11-223ENST00000560858 R3HCC1Q9Y3T6 440 aaKnown RBP3.01□□□□□ -1.93
SPG11-223ENST00000560858 PCDHA8Q9Y5H6 950 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 ARHGAP23Q9P227 1491 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 USP6P35125 1406 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 CRB1P82279 1406 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 PTPRUQ92729 1446 aa3.01□□□□□ -1.93
SPG11-223ENST00000560858 KDRP35968 1356 aa3□□□□□ -1.93
SPG11-223ENST00000560858 RGPD2P0DJD1 1756 aa3□□□□□ -1.93
SPG11-223ENST00000560858 GAGE12BA1L429 117 aa3□□□□□ -1.93
SPG11-223ENST00000560858 CCDC66A2RUB6 948 aa3□□□□□ -1.93
SPG11-223ENST00000560858 GAGE12HA6NDE8 117 aa3□□□□□ -1.93
SPG11-223ENST00000560858 DNAJC9-AS1A6NH13 148 aa3□□□□□ -1.93
SPG11-223ENST00000560858 RNASET2O00584 256 aaKnown RBP3□□□□□ -1.93
SPG11-223ENST00000560858 SCDO00767 359 aa3□□□□□ -1.93
SPG11-223ENST00000560858 LPXNO60711 386 aa3□□□□□ -1.93
SPG11-223ENST00000560858 CDC45O75419 566 aa3□□□□□ -1.93
SPG11-223ENST00000560858 APPP05067 770 aa3□□□□□ -1.93
SPG11-223ENST00000560858 GSPT1P15170 499 aaKnown RBP3□□□□□ -1.93
SPG11-223ENST00000560858 DNM2P50570 870 aa3□□□□□ -1.93
SPG11-223ENST00000560858 GUCY1A3Q02108 690 aa3□□□□□ -1.93
SPG11-223ENST00000560858 FOXF2Q12947 444 aa3□□□□□ -1.93
SPG11-223ENST00000560858 SEC23AQ15436 765 aa3□□□□□ -1.93
SPG11-223ENST00000560858 METTL24Q5JXM2 366 aa3□□□□□ -1.93
SPG11-223ENST00000560858 LRP10Q7Z4F1 713 aa3□□□□□ -1.93
SPG11-223ENST00000560858 GRASPQ7Z6J2 395 aaPredicted RBP3□□□□□ -1.93
SPG11-223ENST00000560858 Q8N9P0 234 aaPredicted RBP3□□□□□ -1.93
SPG11-223ENST00000560858 FAM98AQ8NCA5 519 aaKnown RBP3□□□□□ -1.93
SPG11-223ENST00000560858 GLB1L3Q8NCI6 653 aaPredicted RBP3□□□□□ -1.93
SPG11-223ENST00000560858 UBE2Q2Q8WVN8 375 aa3□□□□□ -1.93
SPG11-223ENST00000560858 LINC00476Q8WZB0 136 aa3□□□□□ -1.93
SPG11-223ENST00000560858 ANKS1AQ92625 1134 aa3□□□□□ -1.93
SPG11-223ENST00000560858 PTPRN2Q92932 1015 aa3□□□□□ -1.93
SPG11-223ENST00000560858 IL17RAQ96F46 866 aa3□□□□□ -1.93
SPG11-223ENST00000560858 WDR92Q96MX6 357 aa3□□□□□ -1.93
SPG11-223ENST00000560858 DCLRE1CQ96SD1 692 aaKnown RBP3□□□□□ -1.93
SPG11-223ENST00000560858 CPPED1Q9BRF8 314 aaPredicted RBP3□□□□□ -1.93
SPG11-223ENST00000560858 CDK19Q9BWU1 502 aa3□□□□□ -1.93
SPG11-223ENST00000560858 PANK2Q9BZ23 570 aa3□□□□□ -1.93
SPG11-223ENST00000560858 API5Q9BZZ5 524 aaKnown RBP3□□□□□ -1.93
SPG11-223ENST00000560858 EPC1Q9H2F5 836 aa3□□□□□ -1.93
SPG11-223ENST00000560858 ZNF768Q9H5H4 540 aaKnown RBP3□□□□□ -1.93
SPG11-223ENST00000560858 GRPEL1Q9HAV7 217 aa3□□□□□ -1.93
SPG11-223ENST00000560858 SMURF1Q9HCE7 757 aa3□□□□□ -1.93
SPG11-223ENST00000560858 ARHGEF4Q9NR80 690 aa3□□□□□ -1.93
SPG11-223ENST00000560858 MAGEL2Q9UJ55 1249 aa3□□□□□ -1.93
SPG11-223ENST00000560858 TLK1Q9UKI8 766 aa3□□□□□ -1.93
SPG11-223ENST00000560858 KIF1AQ12756 1690 aa3□□□□□ -1.93
SPG11-223ENST00000560858 LAMB4A4D0S4 1761 aa3□□□□□ -1.93
SPG11-223ENST00000560858 METP08581 1390 aa3□□□□□ -1.93
SPG11-223ENST00000560858 DDX60Q8IY21 1712 aaKnown RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 PARP4Q9UKK3 1724 aaKnown RBP2.99□□□□□ -1.93
SPG11-223ENST00000560858 NFAT5O94916 1531 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 SALL3Q9BXA9 1300 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 AHRRA9YTQ3 701 aa2.99□□□□□ -1.93
SPG11-223ENST00000560858 NDUFA10O95299 355 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms