RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 CDC42EP1Q00587 391 aa13.92□□□□□ -0.18
SNX1-211ENST00000560829 SMYD5Q6GMV2 418 aa13.92□□□□□ -0.18
SNX1-211ENST00000560829 GLYCTKQ8IVS8 523 aa13.92□□□□□ -0.18
SNX1-211ENST00000560829 LRRN4CLQ8ND94 238 aa13.92□□□□□ -0.18
SNX1-211ENST00000560829 LMBR1Q8WVP7 490 aa13.92□□□□□ -0.18
SNX1-211ENST00000560829 ANKRD7Q92527 254 aa13.92□□□□□ -0.18
SNX1-211ENST00000560829 AGPAT1Q99943 283 aa13.92□□□□□ -0.18
SNX1-211ENST00000560829 CDT1Q9H211 546 aa13.92□□□□□ -0.18
SNX1-211ENST00000560829 VTNP04004 478 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 H2AFZP0C0S5 128 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 HARSP12081 509 aaKnown RBP13.91□□□□□ -0.18
SNX1-211ENST00000560829 PRLRP16471 622 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 ZNF568Q3ZCX4 644 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 SEZ6Q53EL9 994 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 WDR44Q5JSH3 913 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 EEF1DP3Q658K8 133 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 LMBRD2Q68DH5 695 aaPredicted RBP13.91□□□□□ -0.18
SNX1-211ENST00000560829 H2AFVQ71UI9 128 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 SRGAP1Q7Z6B7 1085 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 CEP112Q8N8E3 955 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 EPS8L1Q8TE68 723 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 TATDN2Q93075 761 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 ZNF668Q96K58 619 aaPredicted RBP13.91□□□□□ -0.18
SNX1-211ENST00000560829 C1orf112Q9NSG2 853 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 SETD4Q9NVD3 440 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 NOCTQ9UK39 431 aaKnown RBP13.91□□□□□ -0.18
SNX1-211ENST00000560829 SAR1BQ9Y6B6 198 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 ENC1O14682 589 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 B4GALT4O60513 344 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 SMIM10L2AP0DMW4 78 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 SMIM10L2BP0DMW5 78 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 MCF2P10911 925 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 AKR1A1P14550 325 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 TNFAIP3P21580 790 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 PIK3CAP42336 1068 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 ADAM17P78536 824 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 NOGQ13253 232 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 BIRC3Q13489 604 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 MFSD10Q14728 455 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 NAA30Q147X3 362 aaPredicted RBP13.91□□□□□ -0.18
SNX1-211ENST00000560829 NFRKBQ6P4R8 1299 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 OR5B17Q8NGF7 314 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 U2AF1L4Q8WU68 220 aaKnown RBP13.91□□□□□ -0.18
SNX1-211ENST00000560829 AP5M1Q9H0R1 490 aa13.91□□□□□ -0.18
SNX1-211ENST00000560829 SMIM35A0A1B0GVV1 85 aa13.9□□□□□ -0.18
SNX1-211ENST00000560829 TMEM253P0C7T8 217 aa13.9□□□□□ -0.18
SNX1-211ENST00000560829 LACTBP83111 547 aaPredicted RBP13.9□□□□□ -0.18
SNX1-211ENST00000560829 CYP4F22Q6NT55 531 aa13.9□□□□□ -0.18
SNX1-211ENST00000560829 ZNF710Q8N1W2 664 aa13.9□□□□□ -0.18
SNX1-211ENST00000560829 LENG1Q96BZ8 264 aaPredicted RBP13.9□□□□□ -0.18
SNX1-211ENST00000560829 FAM84AQ96KN4 292 aa13.9□□□□□ -0.18
SNX1-211ENST00000560829 PI4K2AQ9BTU6 479 aa13.9□□□□□ -0.18
SNX1-211ENST00000560829 PDZD7Q9H5P4 517 aa13.9□□□□□ -0.18
SNX1-211ENST00000560829 GPR25O00155 361 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 CYP26A1O43174 497 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 BUB1O43683 1085 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 DUSP11O75319 330 aaKnown RBP13.89□□□□□ -0.19
SNX1-211ENST00000560829 SGPL1O95470 568 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 PSMC4P43686 418 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 PSEN2P49810 448 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 TUBB4BP68371 445 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 IFI16Q16666 785 aaKnown RBP13.89□□□□□ -0.19
SNX1-211ENST00000560829 KYAT1Q16773 422 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 DUOXA2Q1HG44 320 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 RSRC2Q7L4I2 434 aaKnown RBP13.89□□□□□ -0.19
SNX1-211ENST00000560829 REM2Q8IYK8 340 aaPredicted RBP13.89□□□□□ -0.19
SNX1-211ENST00000560829 SLC20A1Q8WUM9 679 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 NLRP7Q8WX94 980 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 DHX38Q92620 1227 aaKnown RBP13.89□□□□□ -0.19
SNX1-211ENST00000560829 KATNAL1Q9BW62 490 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 ISCUQ9H1K1 167 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 ADAMTS10Q9H324 1103 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 HDAC6Q9UBN7 1215 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 TSKSQ9UJT2 592 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 SNX12Q9UMY4 172 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 TSPAN1O60635 241 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 TOMM70O94826 608 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 IL18RAPO95256 599 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 CLTAP09496 248 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 GZMAP12544 262 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 CYBAP13498 195 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 CYP11B1P15538 503 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 CHRNB2P17787 502 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 ARF4P18085 180 aaPredicted RBP13.89□□□□□ -0.19
SNX1-211ENST00000560829 TBXAS1P24557 533 aaPredicted RBP13.89□□□□□ -0.19
SNX1-211ENST00000560829 HOXC8P31273 242 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 GALCP54803 685 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 NCOA4Q13772 614 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 PCBP1Q15365 356 aaKnown RBP eCLIP13.89□□□□□ -0.19
SNX1-211ENST00000560829 TMEM132AQ24JP5 1023 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 ERCC6LQ2NKX8 1250 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 NOP9Q86U38 636 aaKnown RBP13.89□□□□□ -0.19
SNX1-211ENST00000560829 THNSL1Q8IYQ7 743 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 RPUSD2Q8IZ73 545 aaKnown RBP13.89□□□□□ -0.19
SNX1-211ENST00000560829 TRPV1Q8NER1 839 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 UBXN4Q92575 508 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 APOBEC3GQ9HC16 384 aaKnown RBP13.89□□□□□ -0.19
SNX1-211ENST00000560829 CNTN6Q9UQ52 1028 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 NCANO14594 1321 aa13.89□□□□□ -0.19
SNX1-211ENST00000560829 ZSWIM8A7E2V4 1837 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms