RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 CHRNB2P17787 502 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 PEX5P50542 639 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 ADCY1Q08828 1119 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 HIBCHQ6NVY1 386 aaPredicted RBP12.11□□□□□ -0.47
CUX1-218ENST00000560541 PNMA8AQ86V59 439 aaPredicted RBP12.11□□□□□ -0.47
CUX1-218ENST00000560541 CCDC50Q8IVM0 306 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 ZNF564Q8TBZ8 553 aaPredicted RBP12.11□□□□□ -0.47
CUX1-218ENST00000560541 CCT8L1PA6NM43 557 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 MIF4GDA9UHW6 222 aaKnown RBP12.11□□□□□ -0.47
CUX1-218ENST00000560541 TCP10L2B9ZVM9 353 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 DIAPH2O60879 1101 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 CTNNA2P26232 953 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 CTCFP49711 727 aaPredicted RBP12.11□□□□□ -0.47
CUX1-218ENST00000560541 VPS41P49754 854 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 CETN1Q12798 172 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 DACT2Q5SW24 774 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 C1orf220Q5T0J3 134 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 ACBD5Q5T8D3 534 aaPredicted RBP12.11□□□□□ -0.47
CUX1-218ENST00000560541 C11orf63Q6NUN7 778 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 MFN1Q8IWA4 741 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 TCP11Q8WWU5 503 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 ZNF653Q96CK0 615 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 PRMT6Q96LA8 375 aaPredicted RBP12.11□□□□□ -0.47
CUX1-218ENST00000560541 HSPBP1Q9NZL4 362 aa12.11□□□□□ -0.47
CUX1-218ENST00000560541 CLRN2A0PK11 232 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 ECE2O60344 883 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 ZNF189O75820 626 aaPredicted RBP12.1□□□□□ -0.47
CUX1-218ENST00000560541 NPR1P16066 1061 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 COILP38432 576 aaPredicted RBP12.1□□□□□ -0.47
CUX1-218ENST00000560541 MXI1P50539 228 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 EPC2Q52LR7 807 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 C2CD6Q53TS8 623 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 MSL1Q68DK7 614 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 BTNL9Q6UXG8 535 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 INTS8Q75QN2 995 aaKnown RBP12.1□□□□□ -0.47
CUX1-218ENST00000560541 PODNQ7Z5L7 613 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 SLC13A5Q86YT5 568 aaPredicted RBP12.1□□□□□ -0.47
CUX1-218ENST00000560541 RBM12BQ8IXT5 1001 aaKnown RBP12.1□□□□□ -0.47
CUX1-218ENST00000560541 ANKS4BQ8N8V4 417 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 ATG4AQ8WYN0 398 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 DHX38Q92620 1227 aaKnown RBP12.1□□□□□ -0.47
CUX1-218ENST00000560541 RBM41Q96IZ5 413 aaKnown RBP12.1□□□□□ -0.47
CUX1-218ENST00000560541 KREMEN1Q96MU8 473 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 TEKT3Q9BXF9 490 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 TMEM117Q9H0C3 514 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.1□□□□□ -0.473e-6■■■■□ 24.2
CUX1-218ENST00000560541 DNAAF2Q9NVR5 837 aaKnown RBP12.1□□□□□ -0.47
CUX1-218ENST00000560541 CTNNAL1Q9UBT7 734 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 PCYOX1Q9UHG3 505 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 PCDHA3Q9Y5H8 950 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 MAP3K13O43283 966 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 AUHQ13825 339 aaKnown RBP12.1□□□□□ -0.47
CUX1-218ENST00000560541 PPP1R15BQ5SWA1 713 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 DAB2IPQ5VWQ8 1189 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 TSHZ1Q6ZSZ6 1077 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 DYDC1Q8WWB3 177 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 ZNF570Q96NI8 536 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 KIFC3Q9BVG8 833 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 TRIM7Q9C029 511 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 ABCF3Q9NUQ8 709 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 SAMD15Q9P1V8 674 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 UBR3Q6ZT12 1888 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 SLC16A4O15374 487 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 ADRB2P07550 413 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 CLTAP09496 248 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 CNGA1P29973 690 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 C6orf118Q5T5N4 469 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 RNF207Q6ZRF8 634 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 MIER3Q7Z3K6 550 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 CBWD2Q8IUF1 395 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 SEPT12Q8IYM1 358 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 ANKRD42Q8N9B4 389 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 SEMA4DQ92854 862 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 PWWP2AQ96N64 755 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 FAM118BQ9BPY3 351 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 WDR11Q9BZH6 1224 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 TOPORSQ9NS56 1045 aaPredicted RBP12.1□□□□□ -0.47
CUX1-218ENST00000560541 LARSQ9P2J5 1176 aaKnown RBP12.1□□□□□ -0.47
CUX1-218ENST00000560541 QSER1Q2KHR3 1735 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 UBE4BO95155 1302 aa12.1□□□□□ -0.47
CUX1-218ENST00000560541 LRRC37AA6NMS7 1700 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 PODXLO00592 558 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 ITGB5P18084 799 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 DRG2P55039 364 aaKnown RBP12.09□□□□□ -0.47
CUX1-218ENST00000560541 ROR2Q01974 943 aaKnown RBP12.09□□□□□ -0.47
CUX1-218ENST00000560541 SPDYCQ5MJ68 293 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 LLGL2Q6P1M3 1020 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 TBC1D1Q86TI0 1168 aaPredicted RBP12.09□□□□□ -0.47
CUX1-218ENST00000560541 IL31RAQ8NI17 732 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 CENPTQ96BT3 561 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 CDC42EP4Q9H3Q1 356 aaKnown RBP12.09□□□□□ -0.47
CUX1-218ENST00000560541 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.09□□□□□ -0.477e-8■■□□□ 14.3
CUX1-218ENST00000560541 ASIC3Q9UHC3 531 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 NOCTQ9UK39 431 aaKnown RBP12.09□□□□□ -0.47
CUX1-218ENST00000560541 MTUS1Q9ULD2 1270 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 PFASO15067 1338 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 AGTP01019 485 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 VIL1P09327 827 aaKnown RBP12.09□□□□□ -0.47
CUX1-218ENST00000560541 CHKAP35790 457 aa12.09□□□□□ -0.47
CUX1-218ENST00000560541 POLE2P56282 527 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms